miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30438 3' -57.1 NC_006548.1 + 8405 0.66 0.489156
Target:  5'- ---cUCGGCCAGGCCGGccucgaugaGGGUcuGCAUg -3'
miRNA:   3'- guacAGCUGGUCCGGCC---------UUCGu-CGUA- -5'
30438 3' -57.1 NC_006548.1 + 37411 0.66 0.478621
Target:  5'- ---cUCGGCCuGGCCGcuagucGGCAGCGUg -3'
miRNA:   3'- guacAGCUGGuCCGGCcu----UCGUCGUA- -5'
30438 3' -57.1 NC_006548.1 + 9862 0.66 0.478621
Target:  5'- --gGUCGGCCgugaGGGCUuuGGuuGCAGCGg -3'
miRNA:   3'- guaCAGCUGG----UCCGG--CCuuCGUCGUa -5'
30438 3' -57.1 NC_006548.1 + 5574 0.66 0.468199
Target:  5'- -----aGGCCAGGCCGGGccGGCuugcGCAa -3'
miRNA:   3'- guacagCUGGUCCGGCCU--UCGu---CGUa -5'
30438 3' -57.1 NC_006548.1 + 26545 0.66 0.457895
Target:  5'- uGUGcucUCGAUCauAGcGCCGGAGGCAGUc- -3'
miRNA:   3'- gUAC---AGCUGG--UC-CGGCCUUCGUCGua -5'
30438 3' -57.1 NC_006548.1 + 13113 0.66 0.447714
Target:  5'- --gGUCGcgcgcgccaACCAGGCCGaGGAGCAacugcuGCAg -3'
miRNA:   3'- guaCAGC---------UGGUCCGGC-CUUCGU------CGUa -5'
30438 3' -57.1 NC_006548.1 + 24026 0.66 0.437659
Target:  5'- --aGUCGcgagcgccuGCCAGGCCGGgcGguGUc- -3'
miRNA:   3'- guaCAGC---------UGGUCCGGCCuuCguCGua -5'
30438 3' -57.1 NC_006548.1 + 24773 0.67 0.417946
Target:  5'- ---uUCGAUCAGGCCGGAcGUuGGCGa -3'
miRNA:   3'- guacAGCUGGUCCGGCCUuCG-UCGUa -5'
30438 3' -57.1 NC_006548.1 + 22289 0.67 0.380191
Target:  5'- gGUGUCGGCCAGGC--GAucGCGGUAg -3'
miRNA:   3'- gUACAGCUGGUCCGgcCUu-CGUCGUa -5'
30438 3' -57.1 NC_006548.1 + 17617 0.69 0.319828
Target:  5'- ----aUGGCCgagGGGCUGGAGGCAGCu- -3'
miRNA:   3'- guacaGCUGG---UCCGGCCUUCGUCGua -5'
30438 3' -57.1 NC_006548.1 + 30395 0.69 0.319828
Target:  5'- gGUGcCGcCCAGGCCaGggGCGcGCAg -3'
miRNA:   3'- gUACaGCuGGUCCGGcCuuCGU-CGUa -5'
30438 3' -57.1 NC_006548.1 + 26680 0.69 0.311022
Target:  5'- --aGUCGACCGacaucaccuacacGGUCGGAGGUGGCc- -3'
miRNA:   3'- guaCAGCUGGU-------------CCGGCCUUCGUCGua -5'
30438 3' -57.1 NC_006548.1 + 33446 0.71 0.233659
Target:  5'- uGUGUCGACCAGcaCCaGGucGGCGGCAUg -3'
miRNA:   3'- gUACAGCUGGUCc-GG-CCu-UCGUCGUA- -5'
30438 3' -57.1 NC_006548.1 + 4621 0.73 0.172647
Target:  5'- ---uUCGGCCGGGCUGGcAAGCAGUu- -3'
miRNA:   3'- guacAGCUGGUCCGGCC-UUCGUCGua -5'
30438 3' -57.1 NC_006548.1 + 16472 0.73 0.172164
Target:  5'- ---aUCGACCAGGCUGcggcagagcaccuGGAGCAGCAg -3'
miRNA:   3'- guacAGCUGGUCCGGC-------------CUUCGUCGUa -5'
30438 3' -57.1 NC_006548.1 + 16145 1.06 0.000573
Target:  5'- gCAUGUCGACCAGGCCGGAAGCAGCAUg -3'
miRNA:   3'- -GUACAGCUGGUCCGGCCUUCGUCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.