Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30438 | 5' | -58.5 | NC_006548.1 | + | 19980 | 0.74 | 0.13694 |
Target: 5'- cGAUCCGGCGCUCAGcgaggccccGCUCGucaUCGGCc -3' miRNA: 3'- uCUGGGUCGCGGGUCu--------UGAGC---AGCCG- -5' |
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30438 | 5' | -58.5 | NC_006548.1 | + | 2870 | 0.66 | 0.452659 |
Target: 5'- -cGCCUgcaGGCGCUCGucgaaggcGAugUUGUCGGCc -3' miRNA: 3'- ucUGGG---UCGCGGGU--------CUugAGCAGCCG- -5' |
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30438 | 5' | -58.5 | NC_006548.1 | + | 21640 | 0.66 | 0.442829 |
Target: 5'- -cGCCCAGgGCuucaccgucCCGGAAaccCUgGUCGGCc -3' miRNA: 3'- ucUGGGUCgCG---------GGUCUU---GAgCAGCCG- -5' |
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30438 | 5' | -58.5 | NC_006548.1 | + | 20726 | 0.67 | 0.41408 |
Target: 5'- uGGCCCAGCaaaaaGCCCAGGAacaUCGcaacgaGGUc -3' miRNA: 3'- uCUGGGUCG-----CGGGUCUUg--AGCag----CCG- -5' |
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30438 | 5' | -58.5 | NC_006548.1 | + | 21194 | 0.67 | 0.40383 |
Target: 5'- cGGCCUGGcCGCCCAGGcugccgguagcACUgCGcugcugaUCGGCa -3' miRNA: 3'- uCUGGGUC-GCGGGUCU-----------UGA-GC-------AGCCG- -5' |
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30438 | 5' | -58.5 | NC_006548.1 | + | 17445 | 0.67 | 0.386509 |
Target: 5'- cGACCCagcagcggcgauGGCGCCgCAGcuggccgaAGCgaugcagccugUCGUCGGCa -3' miRNA: 3'- uCUGGG------------UCGCGG-GUC--------UUG-----------AGCAGCCG- -5' |
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30438 | 5' | -58.5 | NC_006548.1 | + | 26390 | 0.68 | 0.35932 |
Target: 5'- uGGGCUCAaccuguuGCGCCUGGAagaaacACU-GUCGGCg -3' miRNA: 3'- -UCUGGGU-------CGCGGGUCU------UGAgCAGCCG- -5' |
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30438 | 5' | -58.5 | NC_006548.1 | + | 29105 | 0.68 | 0.343329 |
Target: 5'- -cGCCCAGCaGgCCGGu-CUCGUCaGCg -3' miRNA: 3'- ucUGGGUCG-CgGGUCuuGAGCAGcCG- -5' |
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30438 | 5' | -58.5 | NC_006548.1 | + | 27318 | 0.68 | 0.335121 |
Target: 5'- cGACUCAGCGCUCucucGCUCGcCuGGCc -3' miRNA: 3'- uCUGGGUCGCGGGucu-UGAGCaG-CCG- -5' |
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30438 | 5' | -58.5 | NC_006548.1 | + | 20469 | 0.7 | 0.260974 |
Target: 5'- cGGugCCAGUGCCCAGg---CGUCGu- -3' miRNA: 3'- -UCugGGUCGCGGGUCuugaGCAGCcg -5' |
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30438 | 5' | -58.5 | NC_006548.1 | + | 18574 | 0.68 | 0.319138 |
Target: 5'- uGGACCCGGCGgCCAcgacGGAC-CGggucaUUGGCg -3' miRNA: 3'- -UCUGGGUCGCgGGU----CUUGaGC-----AGCCG- -5' |
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30438 | 5' | -58.5 | NC_006548.1 | + | 29363 | 0.69 | 0.311364 |
Target: 5'- cGGAUCgCAGaGCCaaaguGAGCUgGUCGGCg -3' miRNA: 3'- -UCUGG-GUCgCGGgu---CUUGAgCAGCCG- -5' |
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30438 | 5' | -58.5 | NC_006548.1 | + | 30824 | 0.69 | 0.296249 |
Target: 5'- cGAgCCAGCGCCCGGcgggaUCG-CGGa -3' miRNA: 3'- uCUgGGUCGCGGGUCuug--AGCaGCCg -5' |
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30438 | 5' | -58.5 | NC_006548.1 | + | 9344 | 0.7 | 0.247851 |
Target: 5'- ---gCCAGCGUcuCCAGA--UCGUCGGCu -3' miRNA: 3'- ucugGGUCGCG--GGUCUugAGCAGCCG- -5' |
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30438 | 5' | -58.5 | NC_006548.1 | + | 28010 | 0.7 | 0.241497 |
Target: 5'- uGugUUGGUGCCCAGGGcCUUGgCGGCa -3' miRNA: 3'- uCugGGUCGCGGGUCUU-GAGCaGCCG- -5' |
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30438 | 5' | -58.5 | NC_006548.1 | + | 12630 | 0.71 | 0.229196 |
Target: 5'- cGGCCgAGCGCCCGGcguugaagcGCUCGaCGGa -3' miRNA: 3'- uCUGGgUCGCGGGUCu--------UGAGCaGCCg -5' |
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30438 | 5' | -58.5 | NC_006548.1 | + | 16823 | 0.71 | 0.223247 |
Target: 5'- cAGGCCCAGU-CCaUAGGGCUCaucgucguuGUCGGCg -3' miRNA: 3'- -UCUGGGUCGcGG-GUCUUGAG---------CAGCCG- -5' |
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30438 | 5' | -58.5 | NC_006548.1 | + | 7349 | 0.73 | 0.157253 |
Target: 5'- -cACCCAGCGCCUGGuugacCUCGacCGGCa -3' miRNA: 3'- ucUGGGUCGCGGGUCuu---GAGCa-GCCG- -5' |
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30438 | 5' | -58.5 | NC_006548.1 | + | 22859 | 0.8 | 0.051752 |
Target: 5'- cAGcACCUgguAGCGCCCGGc-CUCGUCGGCg -3' miRNA: 3'- -UC-UGGG---UCGCGGGUCuuGAGCAGCCG- -5' |
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30438 | 5' | -58.5 | NC_006548.1 | + | 35744 | 0.66 | 0.43312 |
Target: 5'- -aGCCgCAGCGUCCAGAG-UCcgGUCGaGCg -3' miRNA: 3'- ucUGG-GUCGCGGGUCUUgAG--CAGC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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