Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30441 | 3' | -62.6 | NC_006548.1 | + | 29614 | 0.68 | 0.19683 |
Target: 5'- -gAGUUCCGCCUGCGguggaaagcgcuccUGC-GGCGGa- -3' miRNA: 3'- cgUCGAGGCGGACGU--------------ACGgCCGCCcg -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 14314 | 0.68 | 0.203666 |
Target: 5'- cGCAGUUCCcgaGCCagGCcgaaGCCGGCGaGCu -3' miRNA: 3'- -CGUCGAGG---CGGa-CGua--CGGCCGCcCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 27104 | 0.67 | 0.209064 |
Target: 5'- uGCAGCgaggCCGCCacCAUgGCCcugauGCGGGCc -3' miRNA: 3'- -CGUCGa---GGCGGacGUA-CGGc----CGCCCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 36972 | 0.67 | 0.214585 |
Target: 5'- cCAGUugaUCgGCCUGCAgcaGCCGguuGCGGuGCg -3' miRNA: 3'- cGUCG---AGgCGGACGUa--CGGC---CGCC-CG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 20789 | 0.67 | 0.214586 |
Target: 5'- -aGGCcggCCGCCUGC-UGCCGcGCcagaaGGCu -3' miRNA: 3'- cgUCGa--GGCGGACGuACGGC-CGc----CCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 11771 | 0.67 | 0.220231 |
Target: 5'- aGCAGCUCCaggucguuGCCUaCAaGCUGGUccuggugaccuuGGGCg -3' miRNA: 3'- -CGUCGAGG--------CGGAcGUaCGGCCG------------CCCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 20134 | 0.67 | 0.220231 |
Target: 5'- uGCGGCUCgGCauagaGCAUGCCGuCGcGCa -3' miRNA: 3'- -CGUCGAGgCGga---CGUACGGCcGCcCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 2409 | 0.67 | 0.220231 |
Target: 5'- -uGGCUUCGCCaGcCAUGCUGGCcaGCa -3' miRNA: 3'- cgUCGAGGCGGaC-GUACGGCCGccCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 21244 | 0.67 | 0.224258 |
Target: 5'- gGCGGCcaggCCGuCCgaGC-UGCCauggaucacgauacGGCGGGCg -3' miRNA: 3'- -CGUCGa---GGC-GGa-CGuACGG--------------CCGCCCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 18790 | 0.67 | 0.231902 |
Target: 5'- aGCAGCaCgGCCUGCG-GCUgGGCGaGGa -3' miRNA: 3'- -CGUCGaGgCGGACGUaCGG-CCGC-CCg -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 33419 | 0.67 | 0.237931 |
Target: 5'- cCAGCUCCGUCcucgaUGuCGaGCUGGuUGGGCu -3' miRNA: 3'- cGUCGAGGCGG-----AC-GUaCGGCC-GCCCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 17767 | 0.67 | 0.237931 |
Target: 5'- aGgAGagUCCGCC-GUAUGCgGcGCGGGUg -3' miRNA: 3'- -CgUCg-AGGCGGaCGUACGgC-CGCCCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 24439 | 0.66 | 0.244091 |
Target: 5'- -gGGCaaCCGCCUGCAauaugGCCGcuugcaGCGcGGCa -3' miRNA: 3'- cgUCGa-GGCGGACGUa----CGGC------CGC-CCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 571 | 0.66 | 0.244091 |
Target: 5'- gGCAGCUguuccaggccggCCGCCUGUucuggaugcucgAUGCCcaGGCccuGGCa -3' miRNA: 3'- -CGUCGA------------GGCGGACG------------UACGG--CCGc--CCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 8789 | 0.66 | 0.250382 |
Target: 5'- aGCAGUUgcagaCCGuCCUGCAUgacGCCGuugGGGCg -3' miRNA: 3'- -CGUCGA-----GGC-GGACGUA---CGGCcg-CCCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 20526 | 0.66 | 0.250382 |
Target: 5'- aGCAGCcucugCCGCCgcUGCGgaagaGCCG-CaGGGCa -3' miRNA: 3'- -CGUCGa----GGCGG--ACGUa----CGGCcG-CCCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 27909 | 0.66 | 0.250382 |
Target: 5'- uGCAGCUCgGCCagcGCGUucCCGGCGcGUu -3' miRNA: 3'- -CGUCGAGgCGGa--CGUAc-GGCCGCcCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 25152 | 0.66 | 0.256806 |
Target: 5'- uGCAGgucaUCCGCCccUGgAUcggugGCCggGGCGGGCu -3' miRNA: 3'- -CGUCg---AGGCGG--ACgUA-----CGG--CCGCCCG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 1043 | 0.66 | 0.256806 |
Target: 5'- aGCAGCUCgGCCUGCAggacgaUGUcuauCGGCaGaaGCu -3' miRNA: 3'- -CGUCGAGgCGGACGU------ACG----GCCGcC--CG- -5' |
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30441 | 3' | -62.6 | NC_006548.1 | + | 7124 | 0.66 | 0.256806 |
Target: 5'- gGCGGCUCUGCCccgaguccuUGC--GCCGcuuacGCGGuGCg -3' miRNA: 3'- -CGUCGAGGCGG---------ACGuaCGGC-----CGCC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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