miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30441 3' -62.6 NC_006548.1 + 38223 0.7 0.143876
Target:  5'- aGCAGCUCgGCCgauucuUGCgGGaGGGCa -3'
miRNA:   3'- -CGUCGAGgCGGacgu--ACGgCCgCCCG- -5'
30441 3' -62.6 NC_006548.1 + 37398 0.76 0.049503
Target:  5'- aGCGGCUcaaaucagaaCCGCCUaGCucGCUGGUGGGCa -3'
miRNA:   3'- -CGUCGA----------GGCGGA-CGuaCGGCCGCCCG- -5'
30441 3' -62.6 NC_006548.1 + 36972 0.67 0.214585
Target:  5'- cCAGUugaUCgGCCUGCAgcaGCCGguuGCGGuGCg -3'
miRNA:   3'- cGUCG---AGgCGGACGUa--CGGC---CGCC-CG- -5'
30441 3' -62.6 NC_006548.1 + 33419 0.67 0.237931
Target:  5'- cCAGCUCCGUCcucgaUGuCGaGCUGGuUGGGCu -3'
miRNA:   3'- cGUCGAGGCGG-----AC-GUaCGGCC-GCCCG- -5'
30441 3' -62.6 NC_006548.1 + 32729 0.71 0.112365
Target:  5'- cGCGuGCUCCucgaccucaGCCuUGCAgGCUggGGCGGGCg -3'
miRNA:   3'- -CGU-CGAGG---------CGG-ACGUaCGG--CCGCCCG- -5'
30441 3' -62.6 NC_006548.1 + 32485 0.66 0.268037
Target:  5'- uGCAGCgCCGCgaacgGCAacggcggcgacggcUGCCGGCcaGGCu -3'
miRNA:   3'- -CGUCGaGGCGga---CGU--------------ACGGCCGc-CCG- -5'
30441 3' -62.6 NC_006548.1 + 29648 0.72 0.095073
Target:  5'- uGguGCcgCUGCCaGCgGUGCCGGUGcGGCa -3'
miRNA:   3'- -CguCGa-GGCGGaCG-UACGGCCGC-CCG- -5'
30441 3' -62.6 NC_006548.1 + 29614 0.68 0.19683
Target:  5'- -gAGUUCCGCCUGCGguggaaagcgcuccUGC-GGCGGa- -3'
miRNA:   3'- cgUCGAGGCGGACGU--------------ACGgCCGCCcg -5'
30441 3' -62.6 NC_006548.1 + 27974 0.66 0.27689
Target:  5'- aGCAGCUCaGCgaGUG-GCUGGaaaaGGGCc -3'
miRNA:   3'- -CGUCGAGgCGgaCGUaCGGCCg---CCCG- -5'
30441 3' -62.6 NC_006548.1 + 27909 0.66 0.250382
Target:  5'- uGCAGCUCgGCCagcGCGUucCCGGCGcGUu -3'
miRNA:   3'- -CGUCGAGgCGGa--CGUAc-GGCCGCcCG- -5'
30441 3' -62.6 NC_006548.1 + 27525 0.66 0.27689
Target:  5'- gGCuGCUguUCGCCgGCAUcGCCGGUuacGGCc -3'
miRNA:   3'- -CGuCGA--GGCGGaCGUA-CGGCCGc--CCG- -5'
30441 3' -62.6 NC_006548.1 + 27104 0.67 0.209064
Target:  5'- uGCAGCgaggCCGCCacCAUgGCCcugauGCGGGCc -3'
miRNA:   3'- -CGUCGa---GGCGGacGUA-CGGc----CGCCCG- -5'
30441 3' -62.6 NC_006548.1 + 25856 0.71 0.122077
Target:  5'- gGCGGaugucaCCGCCUGCuggcCCGcGCGGGCc -3'
miRNA:   3'- -CGUCga----GGCGGACGuac-GGC-CGCCCG- -5'
30441 3' -62.6 NC_006548.1 + 25152 0.66 0.256806
Target:  5'- uGCAGgucaUCCGCCccUGgAUcggugGCCggGGCGGGCu -3'
miRNA:   3'- -CGUCg---AGGCGG--ACgUA-----CGG--CCGCCCG- -5'
30441 3' -62.6 NC_006548.1 + 24439 0.66 0.244091
Target:  5'- -gGGCaaCCGCCUGCAauaugGCCGcuugcaGCGcGGCa -3'
miRNA:   3'- cgUCGa-GGCGGACGUa----CGGC------CGC-CCG- -5'
30441 3' -62.6 NC_006548.1 + 24029 0.66 0.276889
Target:  5'- gGCAGUcgcgagCGCCUGCcagGCCGGgCGGuGUc -3'
miRNA:   3'- -CGUCGag----GCGGACGua-CGGCC-GCC-CG- -5'
30441 3' -62.6 NC_006548.1 + 23869 0.78 0.035036
Target:  5'- cCGGgUCgCGCCaccgGCAUgGCCGGCGGGCu -3'
miRNA:   3'- cGUCgAG-GCGGa---CGUA-CGGCCGCCCG- -5'
30441 3' -62.6 NC_006548.1 + 23800 0.76 0.050943
Target:  5'- -aAGC-CCGCCgGcCAUGCCGGUGGcGCg -3'
miRNA:   3'- cgUCGaGGCGGaC-GUACGGCCGCC-CG- -5'
30441 3' -62.6 NC_006548.1 + 22768 0.66 0.27689
Target:  5'- aGCGGCggagUCGCCuuUGCGgaucGCCgacgaGGCcGGGCg -3'
miRNA:   3'- -CGUCGa---GGCGG--ACGUa---CGG-----CCG-CCCG- -5'
30441 3' -62.6 NC_006548.1 + 22698 0.68 0.192723
Target:  5'- aGCAGCUCguCGCUgccauucagGCgcagaaggugcucGUGCCGGCcGGCg -3'
miRNA:   3'- -CGUCGAG--GCGGa--------CG-------------UACGGCCGcCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.