Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 30441 | 3' | -62.6 | NC_006548.1 | + | 29614 | 0.68 | 0.19683 |
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Target: 5'- -gAGUUCCGCCUGCGguggaaagcgcuccUGC-GGCGGa- -3' miRNA: 3'- cgUCGAGGCGGACGU--------------ACGgCCGCCcg -5' |
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| 30441 | 3' | -62.6 | NC_006548.1 | + | 29648 | 0.72 | 0.095073 |
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Target: 5'- uGguGCcgCUGCCaGCgGUGCCGGUGcGGCa -3' miRNA: 3'- -CguCGa-GGCGGaCG-UACGGCCGC-CCG- -5' |
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| 30441 | 3' | -62.6 | NC_006548.1 | + | 32485 | 0.66 | 0.268037 |
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Target: 5'- uGCAGCgCCGCgaacgGCAacggcggcgacggcUGCCGGCcaGGCu -3' miRNA: 3'- -CGUCGaGGCGga---CGU--------------ACGGCCGc-CCG- -5' |
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| 30441 | 3' | -62.6 | NC_006548.1 | + | 32729 | 0.71 | 0.112365 |
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Target: 5'- cGCGuGCUCCucgaccucaGCCuUGCAgGCUggGGCGGGCg -3' miRNA: 3'- -CGU-CGAGG---------CGG-ACGUaCGG--CCGCCCG- -5' |
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| 30441 | 3' | -62.6 | NC_006548.1 | + | 33419 | 0.67 | 0.237931 |
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Target: 5'- cCAGCUCCGUCcucgaUGuCGaGCUGGuUGGGCu -3' miRNA: 3'- cGUCGAGGCGG-----AC-GUaCGGCC-GCCCG- -5' |
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| 30441 | 3' | -62.6 | NC_006548.1 | + | 36972 | 0.67 | 0.214585 |
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Target: 5'- cCAGUugaUCgGCCUGCAgcaGCCGguuGCGGuGCg -3' miRNA: 3'- cGUCG---AGgCGGACGUa--CGGC---CGCC-CG- -5' |
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| 30441 | 3' | -62.6 | NC_006548.1 | + | 37398 | 0.76 | 0.049503 |
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Target: 5'- aGCGGCUcaaaucagaaCCGCCUaGCucGCUGGUGGGCa -3' miRNA: 3'- -CGUCGA----------GGCGGA-CGuaCGGCCGCCCG- -5' |
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| 30441 | 3' | -62.6 | NC_006548.1 | + | 38223 | 0.7 | 0.143876 |
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Target: 5'- aGCAGCUCgGCCgauucuUGCgGGaGGGCa -3' miRNA: 3'- -CGUCGAGgCGGacgu--ACGgCCgCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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