miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30443 5' -58.2 NC_006548.1 + 17262 0.66 0.469943
Target:  5'- uCCaCUCGGUCAgccaacgGGCC-GGGCcgagGUUGa -3'
miRNA:   3'- -GG-GAGCCGGUa------CCGGaCCCGca--UAAC- -5'
30443 5' -58.2 NC_006548.1 + 12277 0.66 0.449898
Target:  5'- gCCCgUCGGCgCAcagGGCCUGGcGCa----- -3'
miRNA:   3'- -GGG-AGCCG-GUa--CCGGACC-CGcauaac -5'
30443 5' -58.2 NC_006548.1 + 8469 0.67 0.411276
Target:  5'- aCCCUCaucgaGGCC--GGCCUGGccgaGCGUAg-- -3'
miRNA:   3'- -GGGAG-----CCGGuaCCGGACC----CGCAUaac -5'
30443 5' -58.2 NC_006548.1 + 23550 0.67 0.409399
Target:  5'- gCCCUCGGCgAUGaGCUgcaggaauuucaGGGCGUc--- -3'
miRNA:   3'- -GGGAGCCGgUAC-CGGa-----------CCCGCAuaac -5'
30443 5' -58.2 NC_006548.1 + 17440 0.68 0.366002
Target:  5'- gCCgUGGCCucGGCCUGGGUGg---- -3'
miRNA:   3'- gGGaGCCGGuaCCGGACCCGCauaac -5'
30443 5' -58.2 NC_006548.1 + 5488 0.68 0.340536
Target:  5'- aCCgCUCGaGCCAggucGGCCUGGGUc----- -3'
miRNA:   3'- -GG-GAGC-CGGUa---CCGGACCCGcauaac -5'
30443 5' -58.2 NC_006548.1 + 667 0.68 0.340536
Target:  5'- -gCUCuGCCAgGGCCUGGGCa----- -3'
miRNA:   3'- ggGAGcCGGUaCCGGACCCGcauaac -5'
30443 5' -58.2 NC_006548.1 + 14694 0.68 0.332337
Target:  5'- uUCCUCGGCCucuGCCUGGaacuucuucaGCGUGa-- -3'
miRNA:   3'- -GGGAGCCGGuacCGGACC----------CGCAUaac -5'
30443 5' -58.2 NC_006548.1 + 30328 0.7 0.265106
Target:  5'- aCUCUgCGcGCCccUGGCCUGGGCGg---- -3'
miRNA:   3'- -GGGA-GC-CGGu-ACCGGACCCGCauaac -5'
30443 5' -58.2 NC_006548.1 + 5624 0.7 0.238951
Target:  5'- gCC-CGGCC-UGGCCUGcGCGUAg-- -3'
miRNA:   3'- gGGaGCCGGuACCGGACcCGCAUaac -5'
30443 5' -58.2 NC_006548.1 + 13064 0.71 0.220779
Target:  5'- aCCCUCGGCgc-GGCCgGuGGCGUAc-- -3'
miRNA:   3'- -GGGAGCCGguaCCGGaC-CCGCAUaac -5'
30443 5' -58.2 NC_006548.1 + 37414 0.72 0.198394
Target:  5'- aCCCUCGGCC-UGGCCgcuagucGGcaGCGUGg-- -3'
miRNA:   3'- -GGGAGCCGGuACCGGa------CC--CGCAUaac -5'
30443 5' -58.2 NC_006548.1 + 17608 0.72 0.178014
Target:  5'- gCCCa-GGCCAUGGCCgagGGGCu----- -3'
miRNA:   3'- -GGGagCCGGUACCGGa--CCCGcauaac -5'
30443 5' -58.2 NC_006548.1 + 19552 0.79 0.058743
Target:  5'- -gCUCGGCCAUGGCUUGGGaCGUc--- -3'
miRNA:   3'- ggGAGCCGGUACCGGACCC-GCAuaac -5'
30443 5' -58.2 NC_006548.1 + 17665 1.1 0.000259
Target:  5'- cCCCUCGGCCAUGGCCUGGGCGUAUUGa -3'
miRNA:   3'- -GGGAGCCGGUACCGGACCCGCAUAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.