Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30444 | 5' | -58.3 | NC_006548.1 | + | 13024 | 0.69 | 0.299342 |
Target: 5'- -gCGGagcCGUGGAUCACCAcGGCUGcgCCg -3' miRNA: 3'- caGCC---GUACCUAGUGGU-CCGGCa-GGg -5' |
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30444 | 5' | -58.3 | NC_006548.1 | + | 983 | 0.69 | 0.284654 |
Target: 5'- gGUCGGCGcgGGAUCucaaccugcGCCAGGCUGagCa -3' miRNA: 3'- -CAGCCGUa-CCUAG---------UGGUCCGGCagGg -5' |
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30444 | 5' | -58.3 | NC_006548.1 | + | 12312 | 0.7 | 0.256998 |
Target: 5'- -cCGGUaccgcugaGUGGAUCGCCGgccuguauccGGCCG-CCCu -3' miRNA: 3'- caGCCG--------UACCUAGUGGU----------CCGGCaGGG- -5' |
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30444 | 5' | -58.3 | NC_006548.1 | + | 18302 | 0.71 | 0.23158 |
Target: 5'- cUCGGa--GGcUCGuCCGGGCCGUCCUu -3' miRNA: 3'- cAGCCguaCCuAGU-GGUCCGGCAGGG- -5' |
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30444 | 5' | -58.3 | NC_006548.1 | + | 18439 | 0.73 | 0.172451 |
Target: 5'- -gCGGCGUGGucuUCugCAGGgCG-CCCu -3' miRNA: 3'- caGCCGUACCu--AGugGUCCgGCaGGG- -5' |
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30444 | 5' | -58.3 | NC_006548.1 | + | 5639 | 0.73 | 0.158402 |
Target: 5'- uUCGGgGUGGGUCuucuugaGCCAGGCCaucgaGUCCg -3' miRNA: 3'- cAGCCgUACCUAG-------UGGUCCGG-----CAGGg -5' |
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30444 | 5' | -58.3 | NC_006548.1 | + | 29080 | 0.73 | 0.150311 |
Target: 5'- cUCGGCA-GGAgUCGaguauCCAGGCCG-CCCa -3' miRNA: 3'- cAGCCGUaCCU-AGU-----GGUCCGGCaGGG- -5' |
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30444 | 5' | -58.3 | NC_006548.1 | + | 15020 | 0.73 | 0.150311 |
Target: 5'- uGUgGGCggGGAUCaugaACCAGGCCG-CCa -3' miRNA: 3'- -CAgCCGuaCCUAG----UGGUCCGGCaGGg -5' |
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30444 | 5' | -58.3 | NC_006548.1 | + | 8695 | 0.74 | 0.130786 |
Target: 5'- -cCGGCAUGGAaaGCCAGGagCGcCCCa -3' miRNA: 3'- caGCCGUACCUagUGGUCCg-GCaGGG- -5' |
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30444 | 5' | -58.3 | NC_006548.1 | + | 21255 | 0.79 | 0.06038 |
Target: 5'- -cCGGCAgccUGGGcgGCCAGGCCGUCCg -3' miRNA: 3'- caGCCGU---ACCUagUGGUCCGGCAGGg -5' |
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30444 | 5' | -58.3 | NC_006548.1 | + | 18184 | 1.12 | 0.000207 |
Target: 5'- uGUCGGCAUGGAUCACCAGGCCGUCCCa -3' miRNA: 3'- -CAGCCGUACCUAGUGGUCCGGCAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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