Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30445 | 5' | -54.4 | NC_006548.1 | + | 129 | 0.69 | 0.492108 |
Target: 5'- cGGCCGGGUCAaaaaGGCccaacugaucgguucGGCGUUGUCu -3' miRNA: 3'- cCUGGCCCAGUaa--CCG---------------CUGCGAUAGc -5' |
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30445 | 5' | -54.4 | NC_006548.1 | + | 2060 | 0.68 | 0.574417 |
Target: 5'- uGGAUCGcGUC---GGCGAUGUUGUCGu -3' miRNA: 3'- -CCUGGCcCAGuaaCCGCUGCGAUAGC- -5' |
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30445 | 5' | -54.4 | NC_006548.1 | + | 5579 | 0.66 | 0.660587 |
Target: 5'- aGGCCGGGcCggcuugcgcaacugGUUGGCGAUGgcGUCGa -3' miRNA: 3'- cCUGGCCCaG--------------UAACCGCUGCgaUAGC- -5' |
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30445 | 5' | -54.4 | NC_006548.1 | + | 18523 | 0.72 | 0.362455 |
Target: 5'- uGGccGCCGGGUcCAUgucGGC-ACGCUGUCa -3' miRNA: 3'- -CC--UGGCCCA-GUAa--CCGcUGCGAUAGc -5' |
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30445 | 5' | -54.4 | NC_006548.1 | + | 18556 | 1.12 | 0.000564 |
Target: 5'- cGGACCGGGUCAUUGGCGACGCUAUCGa -3' miRNA: 3'- -CCUGGCCCAGUAACCGCUGCGAUAGC- -5' |
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30445 | 5' | -54.4 | NC_006548.1 | + | 22581 | 0.68 | 0.59669 |
Target: 5'- uGGCCGGcGuUCAacuccaGGaCGGCGCUAUCGu -3' miRNA: 3'- cCUGGCC-C-AGUaa----CC-GCUGCGAUAGC- -5' |
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30445 | 5' | -54.4 | NC_006548.1 | + | 24312 | 0.7 | 0.437055 |
Target: 5'- aGGGCCGGGUCugggccGGCGAgCGCc---- -3' miRNA: 3'- -CCUGGCCCAGuaa---CCGCU-GCGauagc -5' |
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30445 | 5' | -54.4 | NC_006548.1 | + | 24803 | 0.66 | 0.708299 |
Target: 5'- cGGCUGGGUCuugccGGUGACGUUcagcaguUCGa -3' miRNA: 3'- cCUGGCCCAGuaa--CCGCUGCGAu------AGC- -5' |
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30445 | 5' | -54.4 | NC_006548.1 | + | 26342 | 0.69 | 0.487917 |
Target: 5'- cGGCCGGGUCGaUGGCcagaGCUA-CGg -3' miRNA: 3'- cCUGGCCCAGUaACCGcug-CGAUaGC- -5' |
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30445 | 5' | -54.4 | NC_006548.1 | + | 35949 | 0.66 | 0.697296 |
Target: 5'- uGGCCGGcagggUGGCGGCGCg--CGa -3' miRNA: 3'- cCUGGCCcaguaACCGCUGCGauaGC- -5' |
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30445 | 5' | -54.4 | NC_006548.1 | + | 36832 | 0.67 | 0.607878 |
Target: 5'- uGGCCGGGUgCuggugugUGGUGugGCgUAUCc -3' miRNA: 3'- cCUGGCCCA-Gua-----ACCGCugCG-AUAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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