miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30446 5' -56.6 NC_006548.1 + 33216 0.66 0.568867
Target:  5'- cGGACUCC-UCGGGCcgcugcccgagcaccGGCCAgccccgguauguugUCGAGGGc -3'
miRNA:   3'- -CUUGAGGuGGCCCG---------------CUGGU--------------AGCUCUC- -5'
30446 5' -56.6 NC_006548.1 + 4955 0.66 0.567766
Target:  5'- -uGCgCCACUGGaGCGGCCGaaaUCGAGc- -3'
miRNA:   3'- cuUGaGGUGGCC-CGCUGGU---AGCUCuc -5'
30446 5' -56.6 NC_006548.1 + 9852 0.66 0.556795
Target:  5'- -uGCUUCACCuGGuCGGCCGU-GAGGGc -3'
miRNA:   3'- cuUGAGGUGGcCC-GCUGGUAgCUCUC- -5'
30446 5' -56.6 NC_006548.1 + 33210 0.66 0.553515
Target:  5'- cGAugUCCuggauaacgaaACCGGGCugccgcaauuugccGACCAggCGGGGGu -3'
miRNA:   3'- -CUugAGG-----------UGGCCCG--------------CUGGUa-GCUCUC- -5'
30446 5' -56.6 NC_006548.1 + 2922 0.66 0.545885
Target:  5'- cGAGCgCCugCaGGCGGCCAaggcgcugaUCGAcGAGu -3'
miRNA:   3'- -CUUGaGGugGcCCGCUGGU---------AGCU-CUC- -5'
30446 5' -56.6 NC_006548.1 + 17947 0.66 0.535045
Target:  5'- gGAACUCCGCCaGGGUcauGCCGUCacGGAu -3'
miRNA:   3'- -CUUGAGGUGG-CCCGc--UGGUAGc-UCUc -5'
30446 5' -56.6 NC_006548.1 + 9310 0.66 0.517863
Target:  5'- -uGCUCaGCCGGGCGAuauguggcaaaugccCCAUCGcGAu -3'
miRNA:   3'- cuUGAGgUGGCCCGCU---------------GGUAGCuCUc -5'
30446 5' -56.6 NC_006548.1 + 1530 0.66 0.513601
Target:  5'- -cACUCCACUGccGGCGACCGccUCGGc-- -3'
miRNA:   3'- cuUGAGGUGGC--CCGCUGGU--AGCUcuc -5'
30446 5' -56.6 NC_006548.1 + 22505 0.68 0.451614
Target:  5'- aGACUCCGagGGGCGGCCAgagCGGccgcccaguGAGg -3'
miRNA:   3'- cUUGAGGUggCCCGCUGGUa--GCU---------CUC- -5'
30446 5' -56.6 NC_006548.1 + 24553 0.69 0.366959
Target:  5'- cGAGCUgcCCGCCGacacGGUGACCGgugaaguccUCGAGGGc -3'
miRNA:   3'- -CUUGA--GGUGGC----CCGCUGGU---------AGCUCUC- -5'
30446 5' -56.6 NC_006548.1 + 20273 0.69 0.349687
Target:  5'- uGAACUUCGCCGaGGaugacggcgcccUGGCCAUCGAGu- -3'
miRNA:   3'- -CUUGAGGUGGC-CC------------GCUGGUAGCUCuc -5'
30446 5' -56.6 NC_006548.1 + 5461 0.69 0.348838
Target:  5'- uGAGCgaucgCCGCCGGGCucaggucGACCGcUCGAGccAGg -3'
miRNA:   3'- -CUUGa----GGUGGCCCG-------CUGGU-AGCUC--UC- -5'
30446 5' -56.6 NC_006548.1 + 19983 1.07 0.000651
Target:  5'- uGAACUCCACCGGGCGACCAUCGAGAGc -3'
miRNA:   3'- -CUUGAGGUGGCCCGCUGGUAGCUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.