Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30447 | 5' | -58.2 | NC_006548.1 | + | 17609 | 0.68 | 0.306083 |
Target: 5'- cCCAGGCCa-UGGCCgaggGGCUggAGGCa -3' miRNA: 3'- aGGUCUGGgaACCGGg---UCGGuaUCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 32133 | 0.69 | 0.301488 |
Target: 5'- aCCAGgacaucACCCUgGGCUCGGCCAgcgccucgaccuuGGCu -3' miRNA: 3'- aGGUC------UGGGAaCCGGGUCGGUau-----------CCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 15097 | 0.69 | 0.290973 |
Target: 5'- cCCAGAUCCUUGGC--GGCCu--GGUu -3' miRNA: 3'- aGGUCUGGGAACCGggUCGGuauCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 20862 | 0.69 | 0.283639 |
Target: 5'- aCCGGAgCCUucUGGCgCGGCagcAGGCg -3' miRNA: 3'- aGGUCUgGGA--ACCGgGUCGguaUCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 32814 | 0.69 | 0.269411 |
Target: 5'- cCCAGAUCCgcccGcCCCAGCCugcaAGGCu -3' miRNA: 3'- aGGUCUGGGaac-C-GGGUCGGua--UCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 16113 | 0.69 | 0.262516 |
Target: 5'- gCCAGACCCagcGCCCAGaacuCGUcGGCa -3' miRNA: 3'- aGGUCUGGGaacCGGGUCg---GUAuCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 1960 | 0.7 | 0.249157 |
Target: 5'- aCCAGGCCg-UGGCUCGGCUuacucaggGGGUg -3' miRNA: 3'- aGGUCUGGgaACCGGGUCGGua------UCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 28051 | 0.7 | 0.236364 |
Target: 5'- --gAGGCCUaUGGUCCAGCCucacagcAGGCg -3' miRNA: 3'- aggUCUGGGaACCGGGUCGGua-----UCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 16833 | 0.71 | 0.218212 |
Target: 5'- gCCaauGGGCCa--GGCCCAGuCCAUAGGg -3' miRNA: 3'- aGG---UCUGGgaaCCGGGUC-GGUAUCCg -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 12342 | 0.71 | 0.190093 |
Target: 5'- aUCCGGccGCCCUcGGCaccaaCCAGCCGUucaauccAGGCu -3' miRNA: 3'- -AGGUC--UGGGAaCCG-----GGUCGGUA-------UCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 26182 | 0.72 | 0.185474 |
Target: 5'- uUCCAcAUCCgccGGCaCCGGCCGUAGGa -3' miRNA: 3'- -AGGUcUGGGaa-CCG-GGUCGGUAUCCg -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 19540 | 0.73 | 0.157146 |
Target: 5'- aUCCAGAUgCc-GGCUCGGCCAU-GGCu -3' miRNA: 3'- -AGGUCUGgGaaCCGGGUCGGUAuCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 34951 | 0.73 | 0.144499 |
Target: 5'- aCCGGugCCa--GUCCaAGCCAUGGGCa -3' miRNA: 3'- aGGUCugGGaacCGGG-UCGGUAUCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 18721 | 0.74 | 0.118534 |
Target: 5'- -gCAGAUCCUc-GCCCAGCCGcAGGCc -3' miRNA: 3'- agGUCUGGGAacCGGGUCGGUaUCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 25758 | 0.75 | 0.105714 |
Target: 5'- cCCAGugCCa--GCCCAGCCA-AGGCc -3' miRNA: 3'- aGGUCugGGaacCGGGUCGGUaUCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 17671 | 0.75 | 0.099804 |
Target: 5'- cUCCAGcCCCUcGGCCaUGGCC-UGGGCg -3' miRNA: 3'- -AGGUCuGGGAaCCGG-GUCGGuAUCCG- -5' |
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30447 | 5' | -58.2 | NC_006548.1 | + | 20102 | 1.1 | 0.000214 |
Target: 5'- cUCCAGACCCUUGGCCCAGCCAUAGGCc -3' miRNA: 3'- -AGGUCUGGGAACCGGGUCGGUAUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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