miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30449 5' -62.2 NC_006548.1 + 8438 0.66 0.286909
Target:  5'- gUAGCGGGUgauguuGGCCGGgCUcucgccuagGGCCuuGGCg -3'
miRNA:   3'- -GUCGUCCG------CCGGCCgGAa--------CUGGu-CCG- -5'
30449 5' -62.2 NC_006548.1 + 27378 0.66 0.279844
Target:  5'- gGGCGGGCcguguugaGGCCaauGCCUauGCCAGcGCg -3'
miRNA:   3'- gUCGUCCG--------CCGGc--CGGAacUGGUC-CG- -5'
30449 5' -62.2 NC_006548.1 + 17105 0.66 0.277752
Target:  5'- cCGGCcgucuGGGCaacgaugauuugcaGGCCGauguucGCCUUGACCuGGUg -3'
miRNA:   3'- -GUCG-----UCCG--------------CCGGC------CGGAACUGGuCCG- -5'
30449 5' -62.2 NC_006548.1 + 17688 0.66 0.277752
Target:  5'- cCGGcCAGGUGaGCugccuccagccccuCGGCCaUGGCCuGGGCg -3'
miRNA:   3'- -GUC-GUCCGC-CG--------------GCCGGaACUGG-UCCG- -5'
30449 5' -62.2 NC_006548.1 + 11814 0.66 0.272918
Target:  5'- gGGCGcGGUGGCCGGCUauugGAUCGaucGCa -3'
miRNA:   3'- gUCGU-CCGCCGGCCGGaa--CUGGUc--CG- -5'
30449 5' -62.2 NC_006548.1 + 4253 0.66 0.272918
Target:  5'- -cGCGGGUGGCguuguugaCGGCau---CCAGGCa -3'
miRNA:   3'- guCGUCCGCCG--------GCCGgaacuGGUCCG- -5'
30449 5' -62.2 NC_006548.1 + 848 0.66 0.272918
Target:  5'- aGGUcaucgAGGCGcaGCUGGCCgaGAUgAGGCu -3'
miRNA:   3'- gUCG-----UCCGC--CGGCCGGaaCUGgUCCG- -5'
30449 5' -62.2 NC_006548.1 + 12829 0.66 0.26613
Target:  5'- gAGCGGcGCGGuaaguCCGGUg-UGGCuCGGGCg -3'
miRNA:   3'- gUCGUC-CGCC-----GGCCGgaACUG-GUCCG- -5'
30449 5' -62.2 NC_006548.1 + 16445 0.66 0.252964
Target:  5'- aAGguGGaaGCCGGCggUgaucgcccgaucGACCAGGCu -3'
miRNA:   3'- gUCguCCgcCGGCCGgaA------------CUGGUCCG- -5'
30449 5' -62.2 NC_006548.1 + 35425 0.66 0.252964
Target:  5'- aAGCAGuGaucaGCCuGGCCggcGACCAGGUg -3'
miRNA:   3'- gUCGUC-Cgc--CGG-CCGGaa-CUGGUCCG- -5'
30449 5' -62.2 NC_006548.1 + 28678 0.67 0.246585
Target:  5'- aAGCAGuuggagaaggaaGCGGCgaccuaCGGCaagGGCCGGGCu -3'
miRNA:   3'- gUCGUC------------CGCCG------GCCGgaaCUGGUCCG- -5'
30449 5' -62.2 NC_006548.1 + 9515 0.67 0.246585
Target:  5'- cCAGCAGGaGGCUGcucuggugcGCgUcGGCCAGGUg -3'
miRNA:   3'- -GUCGUCCgCCGGC---------CGgAaCUGGUCCG- -5'
30449 5' -62.2 NC_006548.1 + 14336 0.67 0.245954
Target:  5'- uCAGCucguccaGGGUcauCCGGCCaucGGCCAGGCg -3'
miRNA:   3'- -GUCG-------UCCGcc-GGCCGGaa-CUGGUCCG- -5'
30449 5' -62.2 NC_006548.1 + 4832 0.67 0.240339
Target:  5'- aAGCcGGCGGCaUGGCU--GACCuucaAGGCu -3'
miRNA:   3'- gUCGuCCGCCG-GCCGGaaCUGG----UCCG- -5'
30449 5' -62.2 NC_006548.1 + 8403 0.67 0.240339
Target:  5'- -cGCucGGCcaGGCCGGCCUcGAUgAGGg -3'
miRNA:   3'- guCGu-CCG--CCGGCCGGAaCUGgUCCg -5'
30449 5' -62.2 NC_006548.1 + 27211 0.67 0.240339
Target:  5'- cCAGCAGGCGGCgaccgagcaaCGcGCU---GCCgAGGCg -3'
miRNA:   3'- -GUCGUCCGCCG----------GC-CGGaacUGG-UCCG- -5'
30449 5' -62.2 NC_006548.1 + 12409 0.67 0.239722
Target:  5'- aCGGCugguuggugccgaGGGCGGCCGGauacaGGCC-GGCg -3'
miRNA:   3'- -GUCG-------------UCCGCCGGCCggaa-CUGGuCCG- -5'
30449 5' -62.2 NC_006548.1 + 5495 0.67 0.234226
Target:  5'- gAGcCAGGuCGGCCugGGUCUugcUGACCccGGCa -3'
miRNA:   3'- gUC-GUCC-GCCGG--CCGGA---ACUGGu-CCG- -5'
30449 5' -62.2 NC_006548.1 + 20023 0.67 0.234226
Target:  5'- aAGCucaauGC-GCCGGCCUaUGGCUGGGCc -3'
miRNA:   3'- gUCGuc---CGcCGGCCGGA-ACUGGUCCG- -5'
30449 5' -62.2 NC_006548.1 + 17949 0.67 0.234226
Target:  5'- gAGCcggaGGGUGGCCaGCCU-GG-CGGGCg -3'
miRNA:   3'- gUCG----UCCGCCGGcCGGAaCUgGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.