miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3045 5' -55 NC_001493.1 + 71537 0.65 0.926807
Target:  5'- aGACcGCCGugaucgcGACCCGGA-UGGUaucaGCGUAg -3'
miRNA:   3'- -CUGaUGGC-------UUGGGCCUuACCG----UGCGU- -5'
3045 5' -55 NC_001493.1 + 19812 0.66 0.921833
Target:  5'- ---gACCGGACCagagCGGGuuguucAUGGUGCGCAa -3'
miRNA:   3'- cugaUGGCUUGG----GCCU------UACCGUGCGU- -5'
3045 5' -55 NC_001493.1 + 67032 0.66 0.910063
Target:  5'- --gUGCCGAucagcCCCGGGAUGG-AUGCc -3'
miRNA:   3'- cugAUGGCUu----GGGCCUUACCgUGCGu -5'
3045 5' -55 NC_001493.1 + 25385 0.67 0.890584
Target:  5'- uGCUcACCGAcCCCgGGGAUGGaACGUAc -3'
miRNA:   3'- cUGA-UGGCUuGGG-CCUUACCgUGCGU- -5'
3045 5' -55 NC_001493.1 + 33054 0.67 0.890584
Target:  5'- ---cGCCGAGCUCGGGGaGGUcuacacgaGCGCAc -3'
miRNA:   3'- cugaUGGCUUGGGCCUUaCCG--------UGCGU- -5'
3045 5' -55 NC_001493.1 + 66545 0.67 0.889898
Target:  5'- aGCUACCGGGCcucaccaCCGGGAcGGUggGCGa -3'
miRNA:   3'- cUGAUGGCUUG-------GGCCUUaCCGugCGU- -5'
3045 5' -55 NC_001493.1 + 32977 0.67 0.868994
Target:  5'- aACUGCCGAucgaaccauccgACCgGGAagAUGGCagACGCc -3'
miRNA:   3'- cUGAUGGCU------------UGGgCCU--UACCG--UGCGu -5'
3045 5' -55 NC_001493.1 + 5574 0.67 0.86135
Target:  5'- -cCUACUcacCCCGGGcUGGCGCGCc -3'
miRNA:   3'- cuGAUGGcuuGGGCCUuACCGUGCGu -5'
3045 5' -55 NC_001493.1 + 121128 0.67 0.86135
Target:  5'- -cCUACUcacCCCGGGcUGGCGCGCc -3'
miRNA:   3'- cuGAUGGcuuGGGCCUuACCGUGCGu -5'
3045 5' -55 NC_001493.1 + 109181 0.67 0.86135
Target:  5'- cGAUggUAUgGAGCCCGGGAgagcgcgGGCGCGa- -3'
miRNA:   3'- -CUG--AUGgCUUGGGCCUUa------CCGUGCgu -5'
3045 5' -55 NC_001493.1 + 108747 0.68 0.853491
Target:  5'- gGAC-ACCaGGCCCGGGAacaaGCGCGCGa -3'
miRNA:   3'- -CUGaUGGcUUGGGCCUUac--CGUGCGU- -5'
3045 5' -55 NC_001493.1 + 56628 0.68 0.845426
Target:  5'- gGGC-ACCGAuccGCCCGaGGcgGGCGCGa- -3'
miRNA:   3'- -CUGaUGGCU---UGGGC-CUuaCCGUGCgu -5'
3045 5' -55 NC_001493.1 + 15402 0.68 0.820057
Target:  5'- ---aGCCGAuCCCGGGcgGGU-CGCAa -3'
miRNA:   3'- cugaUGGCUuGGGCCUuaCCGuGCGU- -5'
3045 5' -55 NC_001493.1 + 130956 0.68 0.820057
Target:  5'- ---aGCCGAuCCCGGGcgGGU-CGCAa -3'
miRNA:   3'- cugaUGGCUuGGGCCUuaCCGuGCGU- -5'
3045 5' -55 NC_001493.1 + 118541 0.69 0.76479
Target:  5'- cGC-ACCGAACCCGcGGAUGGU-CGUg -3'
miRNA:   3'- cUGaUGGCUUGGGC-CUUACCGuGCGu -5'
3045 5' -55 NC_001493.1 + 133172 0.7 0.715302
Target:  5'- cGGCc-CCGAcCCCGGGaucgcucggGUGGCGCGUAg -3'
miRNA:   3'- -CUGauGGCUuGGGCCU---------UACCGUGCGU- -5'
3045 5' -55 NC_001493.1 + 17618 0.7 0.715302
Target:  5'- cGGCc-CCGAcCCCGGGaucgcucggGUGGCGCGUAg -3'
miRNA:   3'- -CUGauGGCUuGGGCCU---------UACCGUGCGU- -5'
3045 5' -55 NC_001493.1 + 110671 0.71 0.674329
Target:  5'- cACgAUCGAACCCGGGucgaGCGCGCAc -3'
miRNA:   3'- cUGaUGGCUUGGGCCUuac-CGUGCGU- -5'
3045 5' -55 NC_001493.1 + 127608 0.72 0.611971
Target:  5'- --aUACCGAgcgaACCCGGGAUGGguUGUg -3'
miRNA:   3'- cugAUGGCU----UGGGCCUUACCguGCGu -5'
3045 5' -55 NC_001493.1 + 12053 0.72 0.611971
Target:  5'- --aUACCGAgcgaACCCGGGAUGGguUGUg -3'
miRNA:   3'- cugAUGGCU----UGGGCCUUACCguGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.