miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30450 3' -63.4 NC_006548.1 + 29654 0.67 0.218111
Target:  5'- cGCUGCCaGCGguGCC-GGuGCGG-CAGGUg -3'
miRNA:   3'- -CGAUGGcCGU--CGGaCC-CGCCgGUCCG- -5'
30450 3' -63.4 NC_006548.1 + 27528 0.67 0.212542
Target:  5'- uGCUguucGCCGGCAucGCC-GGuuaCGGCCuGGCc -3'
miRNA:   3'- -CGA----UGGCCGU--CGGaCCc--GCCGGuCCG- -5'
30450 3' -63.4 NC_006548.1 + 13490 0.67 0.212542
Target:  5'- --aGCCccGUAGuCCUGGGCaaaGGCCAGGa -3'
miRNA:   3'- cgaUGGc-CGUC-GGACCCG---CCGGUCCg -5'
30450 3' -63.4 NC_006548.1 + 18106 0.67 0.191477
Target:  5'- aCUGCaccUGGCCUGGGaCGGCCuGGUg -3'
miRNA:   3'- cGAUGgccGUCGGACCC-GCCGGuCCG- -5'
30450 3' -63.4 NC_006548.1 + 20078 0.68 0.181646
Target:  5'- --gGCCGGCgcauugAGCUUgGGGUGGCCgaugacgagcgGGGCc -3'
miRNA:   3'- cgaUGGCCG------UCGGA-CCCGCCGG-----------UCCG- -5'
30450 3' -63.4 NC_006548.1 + 3825 0.68 0.181646
Target:  5'- aGCU-CCGcauGCAGCUUGGagaaGUGGCC-GGCg -3'
miRNA:   3'- -CGAuGGC---CGUCGGACC----CGCCGGuCCG- -5'
30450 3' -63.4 NC_006548.1 + 4652 0.68 0.167292
Target:  5'- uGCUGCCGuggaaaaGCA-CCUGGaGUuccgcuucGGCCGGGCu -3'
miRNA:   3'- -CGAUGGC-------CGUcGGACC-CG--------CCGGUCCG- -5'
30450 3' -63.4 NC_006548.1 + 22585 0.68 0.16332
Target:  5'- gGCUgugcGCCGGUAGUggUUGGuGCGG-CAGGUg -3'
miRNA:   3'- -CGA----UGGCCGUCG--GACC-CGCCgGUCCG- -5'
30450 3' -63.4 NC_006548.1 + 37958 0.68 0.16332
Target:  5'- aGCUggguGCCGGCGGUgaGGuaGGCCGuGCc -3'
miRNA:   3'- -CGA----UGGCCGUCGgaCCcgCCGGUcCG- -5'
30450 3' -63.4 NC_006548.1 + 22413 0.68 0.16332
Target:  5'- --cGCCGucGCGGCuuaauccucaaCUGGGCGGCCGcucuGGCc -3'
miRNA:   3'- cgaUGGC--CGUCG-----------GACCCGCCGGU----CCG- -5'
30450 3' -63.4 NC_006548.1 + 12202 0.68 0.158579
Target:  5'- aCUGCuCGGCGGCCcgcGGGaucucauCGGCCuuGGCc -3'
miRNA:   3'- cGAUG-GCCGUCGGa--CCC-------GCCGGu-CCG- -5'
30450 3' -63.4 NC_006548.1 + 21522 0.69 0.150684
Target:  5'- gGCUACCGGCAGaa----CGGCCGGGg -3'
miRNA:   3'- -CGAUGGCCGUCggacccGCCGGUCCg -5'
30450 3' -63.4 NC_006548.1 + 17938 0.69 0.146673
Target:  5'- aCUACgaaUGGgAGCCggaGGGUGGCCAgccuGGCg -3'
miRNA:   3'- cGAUG---GCCgUCGGa--CCCGCCGGU----CCG- -5'
30450 3' -63.4 NC_006548.1 + 16528 0.69 0.146673
Target:  5'- uCUGCC-GCAGCCUGGuCGaUCGGGCg -3'
miRNA:   3'- cGAUGGcCGUCGGACCcGCcGGUCCG- -5'
30450 3' -63.4 NC_006548.1 + 12407 0.69 0.14276
Target:  5'- --gGCUGGUugguGCCgaGGGCGGCCggauacAGGCc -3'
miRNA:   3'- cgaUGGCCGu---CGGa-CCCGCCGG------UCCG- -5'
30450 3' -63.4 NC_006548.1 + 7279 0.69 0.140458
Target:  5'- aGCUGCCGGUcgaggucaaccaGGCgCUGGGUgaugacggcagacacGGCCaugaucAGGCu -3'
miRNA:   3'- -CGAUGGCCG------------UCG-GACCCG---------------CCGG------UCCG- -5'
30450 3' -63.4 NC_006548.1 + 16991 0.69 0.138942
Target:  5'- aGCUGCUGGaAGCC-GGGCGcuCCGGGa -3'
miRNA:   3'- -CGAUGGCCgUCGGaCCCGCc-GGUCCg -5'
30450 3' -63.4 NC_006548.1 + 21209 0.69 0.138942
Target:  5'- gGCUGCCGGUAGCaCUGcGCuGCUgaucGGCa -3'
miRNA:   3'- -CGAUGGCCGUCG-GACcCGcCGGu---CCG- -5'
30450 3' -63.4 NC_006548.1 + 15798 0.69 0.135219
Target:  5'- --cGCCacCGGCCUGGGUaucGGCUGGGCg -3'
miRNA:   3'- cgaUGGccGUCGGACCCG---CCGGUCCG- -5'
30450 3' -63.4 NC_006548.1 + 20871 0.69 0.135219
Target:  5'- aGCUcgaucACCGG-AGCCuucUGGcGCGGCagCAGGCg -3'
miRNA:   3'- -CGA-----UGGCCgUCGG---ACC-CGCCG--GUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.