miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30450 5' -55.4 NC_006548.1 + 2056 0.66 0.633867
Target:  5'- -cGCC-UGGAUCGCGu--CGGCGa-- -3'
miRNA:   3'- gaCGGuACCUAGUGCuauGCCGCccg -5'
30450 5' -55.4 NC_006548.1 + 28258 0.66 0.622612
Target:  5'- aCUGCCAUcGGUUAUGcgGCcaaaggggcuGCGGGCg -3'
miRNA:   3'- -GACGGUAcCUAGUGCuaUGc---------CGCCCG- -5'
30450 5' -55.4 NC_006548.1 + 14417 0.66 0.611365
Target:  5'- -gGCCGUaGcGAUgCACGGcugcACGGCuGGGCa -3'
miRNA:   3'- gaCGGUA-C-CUA-GUGCUa---UGCCG-CCCG- -5'
30450 5' -55.4 NC_006548.1 + 9395 0.66 0.600138
Target:  5'- cCUGCCA--GAUCGCGAUGgGGCa--- -3'
miRNA:   3'- -GACGGUacCUAGUGCUAUgCCGcccg -5'
30450 5' -55.4 NC_006548.1 + 29655 0.66 0.577778
Target:  5'- gCUGCCAgcGGugc-CGGUGCGGCaGGUg -3'
miRNA:   3'- -GACGGUa-CCuaguGCUAUGCCGcCCG- -5'
30450 5' -55.4 NC_006548.1 + 8714 0.66 0.577778
Target:  5'- -aGaCCuUGGA-CGCGcUGCgGGCGGGCc -3'
miRNA:   3'- gaC-GGuACCUaGUGCuAUG-CCGCCCG- -5'
30450 5' -55.4 NC_006548.1 + 16312 0.66 0.577778
Target:  5'- -cGCCAcUGG-UgGCGAUcucccggccaAgGGCGGGCu -3'
miRNA:   3'- gaCGGU-ACCuAgUGCUA----------UgCCGCCCG- -5'
30450 5' -55.4 NC_006548.1 + 26910 0.66 0.577778
Target:  5'- -gGCCAUGGGagAgGAcUACGGCaaugGGGUu -3'
miRNA:   3'- gaCGGUACCUagUgCU-AUGCCG----CCCG- -5'
30450 5' -55.4 NC_006548.1 + 15484 0.67 0.555605
Target:  5'- aUGCCcUGGAUCucauCGu--CGGCcGGCa -3'
miRNA:   3'- gACGGuACCUAGu---GCuauGCCGcCCG- -5'
30450 5' -55.4 NC_006548.1 + 9035 0.68 0.511012
Target:  5'- gCUG-CGUGGAgCACGGUACGcagagguacaaccGCGGGg -3'
miRNA:   3'- -GACgGUACCUaGUGCUAUGC-------------CGCCCg -5'
30450 5' -55.4 NC_006548.1 + 29606 0.68 0.501417
Target:  5'- cCUGCgGUGGAaaGCGcuccUGCGGCGGa- -3'
miRNA:   3'- -GACGgUACCUagUGCu---AUGCCGCCcg -5'
30450 5' -55.4 NC_006548.1 + 1250 0.69 0.410482
Target:  5'- uUGCU-UGcGcgCGCGGUGCGGCaGGCu -3'
miRNA:   3'- gACGGuAC-CuaGUGCUAUGCCGcCCG- -5'
30450 5' -55.4 NC_006548.1 + 13020 0.7 0.382515
Target:  5'- -aGCCGUGGAUCACc--ACGGCuGcGCc -3'
miRNA:   3'- gaCGGUACCUAGUGcuaUGCCGcC-CG- -5'
30450 5' -55.4 NC_006548.1 + 4651 0.7 0.382515
Target:  5'- gCUGCCGUGGAaaagcacCugGAguuccgcuuCGGCcGGGCu -3'
miRNA:   3'- -GACGGUACCUa------GugCUau-------GCCG-CCCG- -5'
30450 5' -55.4 NC_006548.1 + 23642 0.71 0.322368
Target:  5'- gUGUCGUGGcugaaGGUGCGaGCGGGCg -3'
miRNA:   3'- gACGGUACCuagugCUAUGC-CGCCCG- -5'
30450 5' -55.4 NC_006548.1 + 36330 0.71 0.322368
Target:  5'- -cGCCGcGaGAUCACGGUACGGCGc-- -3'
miRNA:   3'- gaCGGUaC-CUAGUGCUAUGCCGCccg -5'
30450 5' -55.4 NC_006548.1 + 5030 0.71 0.314375
Target:  5'- -gGCCAUGGAggacaGCGAUACcaaGGGCa -3'
miRNA:   3'- gaCGGUACCUag---UGCUAUGccgCCCG- -5'
30450 5' -55.4 NC_006548.1 + 36299 0.72 0.26957
Target:  5'- -aGCCugcGGGUCGCaauaacccgcggGGUGCGGuCGGGCg -3'
miRNA:   3'- gaCGGua-CCUAGUG------------CUAUGCC-GCCCG- -5'
30450 5' -55.4 NC_006548.1 + 13389 0.73 0.262623
Target:  5'- -cGCCGgcggaaucGGcgCGCGcuccUGCGGCGGGCa -3'
miRNA:   3'- gaCGGUa-------CCuaGUGCu---AUGCCGCCCG- -5'
30450 5' -55.4 NC_006548.1 + 23879 0.74 0.218014
Target:  5'- uUGCCAUcugccGGGUCGCGccaccggcAUGgcCGGCGGGCu -3'
miRNA:   3'- gACGGUA-----CCUAGUGC--------UAU--GCCGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.