miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30451 3' -55.4 NC_006548.1 + 7347 0.66 0.610615
Target:  5'- --cCCAGCGCc-UGGuUGAccUCgACCGGCa -3'
miRNA:   3'- auaGGUCGCGuaGCC-ACU--AG-UGGCCG- -5'
30451 3' -55.4 NC_006548.1 + 37100 0.66 0.610615
Target:  5'- -cUCCAGCGgGUaGGUccaGGUCguGCCGGUc -3'
miRNA:   3'- auAGGUCGCgUAgCCA---CUAG--UGGCCG- -5'
30451 3' -55.4 NC_006548.1 + 32967 0.66 0.588
Target:  5'- --cCCGGUGCAgCGGcGcUgGCCGGCc -3'
miRNA:   3'- auaGGUCGCGUaGCCaCuAgUGGCCG- -5'
30451 3' -55.4 NC_006548.1 + 22340 0.66 0.565542
Target:  5'- --gCCAGCGCguccguGUCGGUGAg--UCGGUc -3'
miRNA:   3'- auaGGUCGCG------UAGCCACUaguGGCCG- -5'
30451 3' -55.4 NC_006548.1 + 32929 0.66 0.564425
Target:  5'- gAUUCAGaucugacCGCGUCGGcGAUUcaACUGGCg -3'
miRNA:   3'- aUAGGUC-------GCGUAGCCaCUAG--UGGCCG- -5'
30451 3' -55.4 NC_006548.1 + 9234 0.67 0.543314
Target:  5'- -cUCUuGCGCGUCGccugucgauUGAUCACgGGCu -3'
miRNA:   3'- auAGGuCGCGUAGCc--------ACUAGUGgCCG- -5'
30451 3' -55.4 NC_006548.1 + 1454 0.67 0.532306
Target:  5'- cGUCagcaucGCGCcgaGGcgGAUCGCCGGCa -3'
miRNA:   3'- aUAGgu----CGCGuagCCa-CUAGUGGCCG- -5'
30451 3' -55.4 NC_006548.1 + 20150 0.67 0.519204
Target:  5'- ---gCAGCGCuUCGGUGuaccugccggacUCACCaGGCa -3'
miRNA:   3'- auagGUCGCGuAGCCACu-----------AGUGG-CCG- -5'
30451 3' -55.4 NC_006548.1 + 12953 0.67 0.510541
Target:  5'- cUGUgCGGCGCAgccgUGGUGAcCA-CGGCu -3'
miRNA:   3'- -AUAgGUCGCGUa---GCCACUaGUgGCCG- -5'
30451 3' -55.4 NC_006548.1 + 15000 0.68 0.478621
Target:  5'- gAUCCAcucGCGCGgacUCGGcagcagUGcgcUCACCGGCa -3'
miRNA:   3'- aUAGGU---CGCGU---AGCC------ACu--AGUGGCCG- -5'
30451 3' -55.4 NC_006548.1 + 22714 0.68 0.478621
Target:  5'- cAUUCAgGCGCAgaaGGUGcUCguGCCGGCc -3'
miRNA:   3'- aUAGGU-CGCGUag-CCACuAG--UGGCCG- -5'
30451 3' -55.4 NC_006548.1 + 12439 0.68 0.478621
Target:  5'- -cUCCAGCGa---GuGUGAUCGCUGGg -3'
miRNA:   3'- auAGGUCGCguagC-CACUAGUGGCCg -5'
30451 3' -55.4 NC_006548.1 + 20328 0.68 0.477574
Target:  5'- cAUCCucGGCgaaguucaagggaGCAUCGGgaaugccuuUGAUgGCCGGCg -3'
miRNA:   3'- aUAGG--UCG-------------CGUAGCC---------ACUAgUGGCCG- -5'
30451 3' -55.4 NC_006548.1 + 12295 0.68 0.457895
Target:  5'- --cCUGGCGCAguuuaugccCGGUaccgcugagugGAUCGCCGGCc -3'
miRNA:   3'- auaGGUCGCGUa--------GCCA-----------CUAGUGGCCG- -5'
30451 3' -55.4 NC_006548.1 + 21796 0.68 0.447714
Target:  5'- --aCCGGCGCGUCcaggccGUGGUCuuCGGUg -3'
miRNA:   3'- auaGGUCGCGUAGc-----CACUAGugGCCG- -5'
30451 3' -55.4 NC_006548.1 + 33860 0.69 0.412138
Target:  5'- gGUCCAGCGgAUCGGgccgaggcgGAagucguacaagcuaaUCGCCuGGCc -3'
miRNA:   3'- aUAGGUCGCgUAGCCa--------CU---------------AGUGG-CCG- -5'
30451 3' -55.4 NC_006548.1 + 4263 0.7 0.353413
Target:  5'- --aUCAGa-CGUCGGUgcucGAUCGCCGGCu -3'
miRNA:   3'- auaGGUCgcGUAGCCA----CUAGUGGCCG- -5'
30451 3' -55.4 NC_006548.1 + 29906 0.7 0.344787
Target:  5'- aUGUCCAGgaGCAgCGG-GGUCAugcCCGGCu -3'
miRNA:   3'- -AUAGGUCg-CGUaGCCaCUAGU---GGCCG- -5'
30451 3' -55.4 NC_006548.1 + 4274 0.71 0.327995
Target:  5'- cAUCCAG-GCAUCGGgccagCuCCGGCg -3'
miRNA:   3'- aUAGGUCgCGUAGCCacua-GuGGCCG- -5'
30451 3' -55.4 NC_006548.1 + 12058 0.71 0.327171
Target:  5'- cGUCCGGCGCcgagcaugcuggGUCGGUGcgCugaugcuccugcuGCUGGCc -3'
miRNA:   3'- aUAGGUCGCG------------UAGCCACuaG-------------UGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.