miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30452 3' -56 NC_006548.1 + 6275 0.66 0.549857
Target:  5'- gAGUugugCCGGgAGCU--UGCGGuGAGGGCa -3'
miRNA:   3'- -UCAa---GGUCgUCGAggACGUC-CUUCCG- -5'
30452 3' -56 NC_006548.1 + 24452 0.66 0.549857
Target:  5'- -cUUUCGGUGGCcaUCUGCAGGGucaAGGCc -3'
miRNA:   3'- ucAAGGUCGUCGa-GGACGUCCU---UCCG- -5'
30452 3' -56 NC_006548.1 + 447 0.66 0.549857
Target:  5'- uGUUCCGGCGGCggaUCUGCuGcGAAcGGa -3'
miRNA:   3'- uCAAGGUCGUCGa--GGACGuC-CUU-CCg -5'
30452 3' -56 NC_006548.1 + 27795 0.66 0.538741
Target:  5'- gGGUUUCuuucGCGGCcgCCaccagGCGGGAauAGGCu -3'
miRNA:   3'- -UCAAGGu---CGUCGa-GGa----CGUCCU--UCCG- -5'
30452 3' -56 NC_006548.1 + 23489 0.66 0.527703
Target:  5'- -aUUCCuGCAGCUCaucGCc-GAGGGCa -3'
miRNA:   3'- ucAAGGuCGUCGAGga-CGucCUUCCG- -5'
30452 3' -56 NC_006548.1 + 29436 0.66 0.51675
Target:  5'- ---aCC-GCGGcCUCCUGCAGcGAcaGGGUg -3'
miRNA:   3'- ucaaGGuCGUC-GAGGACGUC-CU--UCCG- -5'
30452 3' -56 NC_006548.1 + 8052 0.66 0.495128
Target:  5'- cGGcUUCCAGCauGGCUUCUGCc-GAcuGGGCc -3'
miRNA:   3'- -UC-AAGGUCG--UCGAGGACGucCU--UCCG- -5'
30452 3' -56 NC_006548.1 + 20603 0.66 0.495128
Target:  5'- cGGUgcCCuGCGGCUCUUccGCAGcGgcGGCa -3'
miRNA:   3'- -UCAa-GGuCGUCGAGGA--CGUC-CuuCCG- -5'
30452 3' -56 NC_006548.1 + 3724 0.66 0.495128
Target:  5'- ----gCAGCGGCagaUCC-GaCAGGAAGGCu -3'
miRNA:   3'- ucaagGUCGUCG---AGGaC-GUCCUUCCG- -5'
30452 3' -56 NC_006548.1 + 28100 0.66 0.495128
Target:  5'- ---aCCAuaGGcCUCCUGCAGGGccGCg -3'
miRNA:   3'- ucaaGGUcgUC-GAGGACGUCCUucCG- -5'
30452 3' -56 NC_006548.1 + 4174 0.67 0.473927
Target:  5'- --aUUCGGCAGaccaCCcGCGGGAGGGUc -3'
miRNA:   3'- ucaAGGUCGUCga--GGaCGUCCUUCCG- -5'
30452 3' -56 NC_006548.1 + 32500 0.67 0.443009
Target:  5'- --gUCCAGaugcGCUCCUGCAGcgccgcGAAcGGCa -3'
miRNA:   3'- ucaAGGUCgu--CGAGGACGUC------CUU-CCG- -5'
30452 3' -56 NC_006548.1 + 1458 0.68 0.403622
Target:  5'- uGGUU-CAGCAGUUCCUgGCcggcGGcGGGCa -3'
miRNA:   3'- -UCAAgGUCGUCGAGGA-CGu---CCuUCCG- -5'
30452 3' -56 NC_006548.1 + 10218 0.68 0.384776
Target:  5'- ---aCgAGCAGCUCUUGCuGG-AGGUc -3'
miRNA:   3'- ucaaGgUCGUCGAGGACGuCCuUCCG- -5'
30452 3' -56 NC_006548.1 + 18794 0.7 0.331841
Target:  5'- --gUCgAGCAGCacggCCUGCGGcuGGGCg -3'
miRNA:   3'- ucaAGgUCGUCGa---GGACGUCcuUCCG- -5'
30452 3' -56 NC_006548.1 + 1046 0.7 0.315426
Target:  5'- ---gUCAGCAGCUcggCCUGCAGGAcgaugucuaucGGCa -3'
miRNA:   3'- ucaaGGUCGUCGA---GGACGUCCUu----------CCG- -5'
30452 3' -56 NC_006548.1 + 19051 0.7 0.297317
Target:  5'- cAGUUCCGGCucgggggccuacauGGCgCCUGCAcGGugGAGGUg -3'
miRNA:   3'- -UCAAGGUCG--------------UCGaGGACGU-CC--UUCCG- -5'
30452 3' -56 NC_006548.1 + 19148 0.7 0.291968
Target:  5'- gAGaUCCgAGCgGGCUUCUGCAGGAuaucGGGg -3'
miRNA:   3'- -UCaAGG-UCG-UCGAGGACGUCCU----UCCg -5'
30452 3' -56 NC_006548.1 + 13392 0.71 0.284457
Target:  5'- gAGcgCCGGCGgaaucggcgcgcGCUCCUGC-GGcGGGCa -3'
miRNA:   3'- -UCaaGGUCGU------------CGAGGACGuCCuUCCG- -5'
30452 3' -56 NC_006548.1 + 20017 0.71 0.2771
Target:  5'- uAGgUCgCGGCGauCUCCUGCAGGAuGGCc -3'
miRNA:   3'- -UCaAG-GUCGUc-GAGGACGUCCUuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.