miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30453 3' -57 NC_006548.1 + 36594 0.66 0.573186
Target:  5'- cGGCCGGC--ACCGcggugcucgcGCGgGGAUGCGUc -3'
miRNA:   3'- aCUGGCUGagUGGC----------UGUgCCUGCGCG- -5'
30453 3' -57 NC_006548.1 + 9511 0.66 0.573186
Target:  5'- cGACCGGCUgaugcCAUCaGCGCuGGACG-GCu -3'
miRNA:   3'- aCUGGCUGA-----GUGGcUGUG-CCUGCgCG- -5'
30453 3' -57 NC_006548.1 + 9305 0.66 0.573186
Target:  5'- aGcCCGugaUCAaUCGACAgGcGACGCGCa -3'
miRNA:   3'- aCuGGCug-AGU-GGCUGUgC-CUGCGCG- -5'
30453 3' -57 NC_006548.1 + 33875 0.66 0.573186
Target:  5'- cGGCCGG-UgAgCGACgAUGGACgGCGCa -3'
miRNA:   3'- aCUGGCUgAgUgGCUG-UGCCUG-CGCG- -5'
30453 3' -57 NC_006548.1 + 7940 0.66 0.573186
Target:  5'- -cGCCGccuGCaUCAuCCGGCGCGcuGCGCGCu -3'
miRNA:   3'- acUGGC---UG-AGU-GGCUGUGCc-UGCGCG- -5'
30453 3' -57 NC_006548.1 + 35415 0.66 0.56234
Target:  5'- -cACCGGCUCAuCCaGGCuuuCGGGuacuuguucauCGCGCa -3'
miRNA:   3'- acUGGCUGAGU-GG-CUGu--GCCU-----------GCGCG- -5'
30453 3' -57 NC_006548.1 + 37806 0.66 0.56234
Target:  5'- cGGCUGGCgaugcCGuCUGGCACGGugGUauuGCu -3'
miRNA:   3'- aCUGGCUGa----GU-GGCUGUGCCugCG---CG- -5'
30453 3' -57 NC_006548.1 + 34628 0.66 0.551549
Target:  5'- -cGCCGAa--GCCGAaacCGGAgGCGCu -3'
miRNA:   3'- acUGGCUgagUGGCUgu-GCCUgCGCG- -5'
30453 3' -57 NC_006548.1 + 35935 0.66 0.551549
Target:  5'- cGGCCGcGCggaucgCGCCGgcauucuucGCACGGGCaCGCc -3'
miRNA:   3'- aCUGGC-UGa-----GUGGC---------UGUGCCUGcGCG- -5'
30453 3' -57 NC_006548.1 + 30362 0.66 0.551549
Target:  5'- cUGGCguaCGGCUauaGCCGuGC-CGGACGCGg -3'
miRNA:   3'- -ACUG---GCUGAg--UGGC-UGuGCCUGCGCg -5'
30453 3' -57 NC_006548.1 + 12873 0.66 0.551549
Target:  5'- -cGCCG-CUCGCgCGGCACuGGCGaGCa -3'
miRNA:   3'- acUGGCuGAGUG-GCUGUGcCUGCgCG- -5'
30453 3' -57 NC_006548.1 + 22064 0.66 0.551549
Target:  5'- gGugCGACggcccagcaCGCCGAUguuCGGGCGCa- -3'
miRNA:   3'- aCugGCUGa--------GUGGCUGu--GCCUGCGcg -5'
30453 3' -57 NC_006548.1 + 18875 0.66 0.540822
Target:  5'- gGAUCG-CUgAUCGAUuggGCGGACGUGg -3'
miRNA:   3'- aCUGGCuGAgUGGCUG---UGCCUGCGCg -5'
30453 3' -57 NC_006548.1 + 3691 0.66 0.540822
Target:  5'- cGACCauGACgcugagCGCCGAgGCGGugaacugGCGCu -3'
miRNA:   3'- aCUGG--CUGa-----GUGGCUgUGCCug-----CGCG- -5'
30453 3' -57 NC_006548.1 + 15422 0.67 0.519588
Target:  5'- cGGCCGACgaugagauCCagGGCAUGGAUgagGCGCa -3'
miRNA:   3'- aCUGGCUGagu-----GG--CUGUGCCUG---CGCG- -5'
30453 3' -57 NC_006548.1 + 34848 0.67 0.519588
Target:  5'- cGGCCGGgUUACUG-CGuaucCGGuGCGCGCg -3'
miRNA:   3'- aCUGGCUgAGUGGCuGU----GCC-UGCGCG- -5'
30453 3' -57 NC_006548.1 + 28201 0.67 0.519588
Target:  5'- aUGAaccCCGACUCACCGGCcUGGAUc--- -3'
miRNA:   3'- -ACU---GGCUGAGUGGCUGuGCCUGcgcg -5'
30453 3' -57 NC_006548.1 + 22801 0.67 0.508049
Target:  5'- gGACUGGCcacuucaUCGCCGGC-CGGcACGaGCa -3'
miRNA:   3'- aCUGGCUG-------AGUGGCUGuGCC-UGCgCG- -5'
30453 3' -57 NC_006548.1 + 18460 0.67 0.49869
Target:  5'- -cACCGccAUUCaaACCGACugGGA-GCGCu -3'
miRNA:   3'- acUGGC--UGAG--UGGCUGugCCUgCGCG- -5'
30453 3' -57 NC_006548.1 + 5447 0.67 0.497654
Target:  5'- uUGGCgGA-UCACCGAauaccugaugggcCAUGG-CGCGCa -3'
miRNA:   3'- -ACUGgCUgAGUGGCU-------------GUGCCuGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.