miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30453 5' -54.8 NC_006548.1 + 34669 0.66 0.68329
Target:  5'- cCGCAGACCGAggacGgcacCGGccacuacgugaucuUCGGCGAu -3'
miRNA:   3'- cGCGUCUGGCUa---Caa--GCCu-------------AGCCGCU- -5'
30453 5' -54.8 NC_006548.1 + 15153 0.66 0.678848
Target:  5'- cGCGCAGGCCGGcaa---GcgCGGCGGa -3'
miRNA:   3'- -CGCGUCUGGCUacaagcCuaGCCGCU- -5'
30453 5' -54.8 NC_006548.1 + 22051 0.66 0.678848
Target:  5'- -aGCAcGCCGAUGUUCGGGcgcaGGaUGAc -3'
miRNA:   3'- cgCGUcUGGCUACAAGCCUag--CC-GCU- -5'
30453 5' -54.8 NC_006548.1 + 33869 0.66 0.667713
Target:  5'- cGCGCGcGGCCGGUGagcgacgaUGGA-CGGCGc -3'
miRNA:   3'- -CGCGU-CUGGCUACaa------GCCUaGCCGCu -5'
30453 5' -54.8 NC_006548.1 + 12833 0.66 0.656543
Target:  5'- gGCGCGGuaaguCCGGUGU--GGcUCgGGCGAa -3'
miRNA:   3'- -CGCGUCu----GGCUACAagCCuAG-CCGCU- -5'
30453 5' -54.8 NC_006548.1 + 13282 0.66 0.634144
Target:  5'- gGCGCAGcACCaGGUGccgcUCGGua-GGCGGu -3'
miRNA:   3'- -CGCGUC-UGG-CUACa---AGCCuagCCGCU- -5'
30453 5' -54.8 NC_006548.1 + 32751 0.67 0.622936
Target:  5'- uUGCAGGCUGGggcGggCGGAUCugGGCGc -3'
miRNA:   3'- cGCGUCUGGCUa--CaaGCCUAG--CCGCu -5'
30453 5' -54.8 NC_006548.1 + 6873 0.67 0.622936
Target:  5'- uGCGCAGuuCGGUGacCGGcucCGGCGc -3'
miRNA:   3'- -CGCGUCugGCUACaaGCCua-GCCGCu -5'
30453 5' -54.8 NC_006548.1 + 28011 0.67 0.622936
Target:  5'- -gGCGGccgaguuucuGCCGcgGUUCGGcgCGGCc- -3'
miRNA:   3'- cgCGUC----------UGGCuaCAAGCCuaGCCGcu -5'
30453 5' -54.8 NC_006548.1 + 33140 0.68 0.567217
Target:  5'- gGgGCuGGCCGGUGcUCGGGcagCGGCc- -3'
miRNA:   3'- -CgCGuCUGGCUACaAGCCUa--GCCGcu -5'
30453 5' -54.8 NC_006548.1 + 36278 0.68 0.566113
Target:  5'- cGCGgGGugCGGUcGggCGGGguccaguUCGGCGGc -3'
miRNA:   3'- -CGCgUCugGCUA-CaaGCCU-------AGCCGCU- -5'
30453 5' -54.8 NC_006548.1 + 27077 0.68 0.534369
Target:  5'- aUGCGGGCCGucug-CuGAUCGGCGGa -3'
miRNA:   3'- cGCGUCUGGCuacaaGcCUAGCCGCU- -5'
30453 5' -54.8 NC_006548.1 + 14260 0.68 0.512846
Target:  5'- gGCGCcuGGCCGAUGgcCGGAUgacccUGGaCGAg -3'
miRNA:   3'- -CGCGu-CUGGCUACaaGCCUA-----GCC-GCU- -5'
30453 5' -54.8 NC_006548.1 + 17128 0.73 0.285205
Target:  5'- uUGCAGGCCGAUGUUCGccuuGAccUGGUGAa -3'
miRNA:   3'- cGCGUCUGGCUACAAGC----CUa-GCCGCU- -5'
30453 5' -54.8 NC_006548.1 + 22374 1.11 0.000576
Target:  5'- cGCGCAGACCGAUGUUCGGAUCGGCGAu -3'
miRNA:   3'- -CGCGUCUGGCUACAAGCCUAGCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.