miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30454 3' -57.7 NC_006548.1 + 12280 0.66 0.486885
Target:  5'- cGUCGGCGCacaGGgcCUGgCGCAGUUuaugcCCGg -3'
miRNA:   3'- -UAGCCGUGg--CUa-GACgGCGUCAA-----GGC- -5'
30454 3' -57.7 NC_006548.1 + 21289 0.66 0.47653
Target:  5'- uUCGGUgcugauGCCGAUCaGCagCGCAGUgcuaCCGg -3'
miRNA:   3'- uAGCCG------UGGCUAGaCG--GCGUCAa---GGC- -5'
30454 3' -57.7 NC_006548.1 + 3650 0.66 0.460191
Target:  5'- gGUCGGgGCUGAagccuuccugucggaUCUGCCGCug--CCGc -3'
miRNA:   3'- -UAGCCgUGGCU---------------AGACGGCGucaaGGC- -5'
30454 3' -57.7 NC_006548.1 + 17881 0.66 0.456154
Target:  5'- gGUCGGCG-CGAUUUGCCcCGGcgCUGa -3'
miRNA:   3'- -UAGCCGUgGCUAGACGGcGUCaaGGC- -5'
30454 3' -57.7 NC_006548.1 + 28540 0.66 0.446142
Target:  5'- cUCGGCGCCGGcCagGUCGCGGcgCUa -3'
miRNA:   3'- uAGCCGUGGCUaGa-CGGCGUCaaGGc -5'
30454 3' -57.7 NC_006548.1 + 21801 0.67 0.426496
Target:  5'- -gCGGCACCGGcgcgUCcagGCCGUGGUcUUCGg -3'
miRNA:   3'- uaGCCGUGGCU----AGa--CGGCGUCA-AGGC- -5'
30454 3' -57.7 NC_006548.1 + 28963 0.67 0.407373
Target:  5'- cUCGGCGCCGGccgccUCgacgguuugGCCGguGgcCCGa -3'
miRNA:   3'- uAGCCGUGGCU-----AGa--------CGGCguCaaGGC- -5'
30454 3' -57.7 NC_006548.1 + 25509 0.67 0.407373
Target:  5'- cUCGGCG-CGAUCUGUgGCGa-UCCGg -3'
miRNA:   3'- uAGCCGUgGCUAGACGgCGUcaAGGC- -5'
30454 3' -57.7 NC_006548.1 + 22651 0.67 0.40643
Target:  5'- gAUCGGUGCCGAUCUggagauccaggacGCCGCcacgCUGg -3'
miRNA:   3'- -UAGCCGUGGCUAGA-------------CGGCGucaaGGC- -5'
30454 3' -57.7 NC_006548.1 + 18184 0.67 0.386057
Target:  5'- uGUCGGCAUgGAUCaccagGCCgucccaggccagguGCAGUUCgCGg -3'
miRNA:   3'- -UAGCCGUGgCUAGa----CGG--------------CGUCAAG-GC- -5'
30454 3' -57.7 NC_006548.1 + 34904 0.68 0.336501
Target:  5'- -cUGGCACCGGUUcguUGCCGaGGgaaUCCGg -3'
miRNA:   3'- uaGCCGUGGCUAG---ACGGCgUCa--AGGC- -5'
30454 3' -57.7 NC_006548.1 + 16794 0.68 0.3283
Target:  5'- uGUCGGCGCCGGUCgagaaaUGCCagaaguaaggcGCAGggCaCGg -3'
miRNA:   3'- -UAGCCGUGGCUAG------ACGG-----------CGUCaaG-GC- -5'
30454 3' -57.7 NC_006548.1 + 35758 0.7 0.275052
Target:  5'- aGUCGuCACgGAUCaGCCGCAGcgUCCa -3'
miRNA:   3'- -UAGCcGUGgCUAGaCGGCGUCa-AGGc -5'
30454 3' -57.7 NC_006548.1 + 13303 0.76 0.105043
Target:  5'- cUCGGCGCCGGUUUgcccGCCGCAGgagcgcgcgCCGa -3'
miRNA:   3'- uAGCCGUGGCUAGA----CGGCGUCaa-------GGC- -5'
30454 3' -57.7 NC_006548.1 + 28009 0.79 0.064044
Target:  5'- -cCGGCgGCCGAguuUCUGCCGCGGUUCgGc -3'
miRNA:   3'- uaGCCG-UGGCU---AGACGGCGUCAAGgC- -5'
30454 3' -57.7 NC_006548.1 + 22701 1.06 0.000559
Target:  5'- gAUCGGCACCGAUCUGCCGCAGUUCCGc -3'
miRNA:   3'- -UAGCCGUGGCUAGACGGCGUCAAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.