miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30454 5' -57.9 NC_006548.1 + 5055 0.66 0.456154
Target:  5'- -gCGGCGca-GGGugGAUuuaccGGCGCCGg -3'
miRNA:   3'- aaGCCGCucgCCUugCUA-----UCGCGGCa -5'
30454 5' -57.9 NC_006548.1 + 25431 0.66 0.456154
Target:  5'- gUCGGCGAGgugauggacCGGAucgccacaGAUcGCGCCGa -3'
miRNA:   3'- aAGCCGCUC---------GCCUug------CUAuCGCGGCa -5'
30454 5' -57.9 NC_006548.1 + 22920 0.66 0.450132
Target:  5'- -gCGGCGAGUugggccggacuaucgGGGugGAcUGGCcGCCGg -3'
miRNA:   3'- aaGCCGCUCG---------------CCUugCU-AUCG-CGGCa -5'
30454 5' -57.9 NC_006548.1 + 27387 0.66 0.426496
Target:  5'- cUCGGCcaGGC-GAGCGAgagAGCGCUGa -3'
miRNA:   3'- aAGCCGc-UCGcCUUGCUa--UCGCGGCa -5'
30454 5' -57.9 NC_006548.1 + 21360 0.67 0.416867
Target:  5'- --gGGCGAGCGGuugccGCGAcucuGCcGCCGg -3'
miRNA:   3'- aagCCGCUCGCCu----UGCUau--CG-CGGCa -5'
30454 5' -57.9 NC_006548.1 + 22078 0.67 0.388796
Target:  5'- cUCGGCGA-CGaGGGC-AUGGUGCCGa -3'
miRNA:   3'- aAGCCGCUcGC-CUUGcUAUCGCGGCa -5'
30454 5' -57.9 NC_006548.1 + 1480 0.67 0.379718
Target:  5'- -cCGGC-AGUGGAGUGGUAGCGCUc- -3'
miRNA:   3'- aaGCCGcUCGCCUUGCUAUCGCGGca -5'
30454 5' -57.9 NC_006548.1 + 32761 0.67 0.370783
Target:  5'- --gGGCGGGCGGAucug-GGCGCUGc -3'
miRNA:   3'- aagCCGCUCGCCUugcuaUCGCGGCa -5'
30454 5' -57.9 NC_006548.1 + 35726 0.68 0.344009
Target:  5'- -cCGGuCGAGCGGGAaaggaacUGAgUGGCGCCa- -3'
miRNA:   3'- aaGCC-GCUCGCCUU-------GCU-AUCGCGGca -5'
30454 5' -57.9 NC_006548.1 + 28330 0.68 0.336501
Target:  5'- -gCGGCGcGCGuGAACGGUccCGCCGg -3'
miRNA:   3'- aaGCCGCuCGC-CUUGCUAucGCGGCa -5'
30454 5' -57.9 NC_006548.1 + 15323 0.69 0.312344
Target:  5'- -cCGGUGGGUGGAgAUGAucuccaUAGCGCCa- -3'
miRNA:   3'- aaGCCGCUCGCCU-UGCU------AUCGCGGca -5'
30454 5' -57.9 NC_006548.1 + 14949 0.7 0.24141
Target:  5'- -cCGcGCGAGUGGaucaAugGGUAGCaGCCGUg -3'
miRNA:   3'- aaGC-CGCUCGCC----UugCUAUCG-CGGCA- -5'
30454 5' -57.9 NC_006548.1 + 17468 0.73 0.147723
Target:  5'- cUCGGCGAacucgGUGGAagGCGucGGCGCCGUg -3'
miRNA:   3'- aAGCCGCU-----CGCCU--UGCuaUCGCGGCA- -5'
30454 5' -57.9 NC_006548.1 + 21208 0.82 0.034349
Target:  5'- -aCGGCGGGCGG--CGAUGGCGCCGc -3'
miRNA:   3'- aaGCCGCUCGCCuuGCUAUCGCGGCa -5'
30454 5' -57.9 NC_006548.1 + 22665 1.04 0.000713
Target:  5'- gUUCGGCGAGCGGAACGAUAGCGCCGUc -3'
miRNA:   3'- -AAGCCGCUCGCCUUGCUAUCGCGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.