miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30456 5' -49.2 NC_006548.1 + 18474 0.66 0.929124
Target:  5'- cCGACUGGGagCGCUGGcUCGaUAGCGu- -3'
miRNA:   3'- -GCUGACUUa-GCGGUCaAGC-AUCGUuc -5'
30456 5' -49.2 NC_006548.1 + 18328 0.66 0.922957
Target:  5'- uGGCUGGGacuacgCGCCAGgaCGgAGCAAc -3'
miRNA:   3'- gCUGACUUa-----GCGGUCaaGCaUCGUUc -5'
30456 5' -49.2 NC_006548.1 + 22587 0.66 0.922957
Target:  5'- gCGGCUGug-CGCCGGUaguggUUGgugcGGCAGGu -3'
miRNA:   3'- -GCUGACuuaGCGGUCA-----AGCa---UCGUUC- -5'
30456 5' -49.2 NC_006548.1 + 5119 0.66 0.916473
Target:  5'- gCGACgUGAuacAUCGCCucgcGgaCGUAGCGAa -3'
miRNA:   3'- -GCUG-ACU---UAGCGGu---CaaGCAUCGUUc -5'
30456 5' -49.2 NC_006548.1 + 29280 0.67 0.895142
Target:  5'- gCGGCcGGAUCGCCAGUUgcCuUGGCcAGc -3'
miRNA:   3'- -GCUGaCUUAGCGGUCAA--GcAUCGuUC- -5'
30456 5' -49.2 NC_006548.1 + 12801 0.67 0.887416
Target:  5'- -cGCUGAAUcacCGCCAGaUCGaGGUAGGu -3'
miRNA:   3'- gcUGACUUA---GCGGUCaAGCaUCGUUC- -5'
30456 5' -49.2 NC_006548.1 + 14395 0.67 0.879393
Target:  5'- aCGGCUGGGcagcUCGCCGGcUUCGgccUGGCucGGg -3'
miRNA:   3'- -GCUGACUU----AGCGGUC-AAGC---AUCGu-UC- -5'
30456 5' -49.2 NC_006548.1 + 22744 0.68 0.844462
Target:  5'- aCGAgCUGcucGAUCGCCAG--CGUGGCGGc -3'
miRNA:   3'- -GCU-GAC---UUAGCGGUCaaGCAUCGUUc -5'
30456 5' -49.2 NC_006548.1 + 13677 0.7 0.740985
Target:  5'- cCGGCUGGA-CGCCA--UCG-AGCAGGc -3'
miRNA:   3'- -GCUGACUUaGCGGUcaAGCaUCGUUC- -5'
30456 5' -49.2 NC_006548.1 + 24804 0.7 0.706862
Target:  5'- aCGGCUGggUCuuGCCGGUgaCGUucAGCAGu -3'
miRNA:   3'- -GCUGACuuAG--CGGUCAa-GCA--UCGUUc -5'
30456 5' -49.2 NC_006548.1 + 22953 1.09 0.002788
Target:  5'- gCGACUGAAUCGCCAGUUCGUAGCAAGc -3'
miRNA:   3'- -GCUGACUUAGCGGUCAAGCAUCGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.