miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30457 3' -56.2 NC_006548.1 + 30563 0.66 0.610557
Target:  5'- gGUUCCaUGCcagCaGUUGCACCC-GCGGg -3'
miRNA:   3'- gCGAGG-GCGa--GcUAACGUGGGuUGCC- -5'
30457 3' -56.2 NC_006548.1 + 27396 0.66 0.574075
Target:  5'- cCGCUCCUGCUCggccaggcgagcgaGAgaGCGCUgAGuCGGa -3'
miRNA:   3'- -GCGAGGGCGAG--------------CUaaCGUGGgUU-GCC- -5'
30457 3' -56.2 NC_006548.1 + 17559 0.67 0.512461
Target:  5'- gCGCgagcgCCUGCUCGAUcuaGCucCCCAGCu- -3'
miRNA:   3'- -GCGa----GGGCGAGCUAa--CGu-GGGUUGcc -5'
30457 3' -56.2 NC_006548.1 + 19050 0.68 0.448765
Target:  5'- aGUUCCgGCUCGGgggccuacaugGCGCCUGcACGGu -3'
miRNA:   3'- gCGAGGgCGAGCUaa---------CGUGGGU-UGCC- -5'
30457 3' -56.2 NC_006548.1 + 13371 0.69 0.411956
Target:  5'- gCGCUCCUGCggCGGgcaaaccgGCGCCgAggGCGGu -3'
miRNA:   3'- -GCGAGGGCGa-GCUaa------CGUGGgU--UGCC- -5'
30457 3' -56.2 NC_006548.1 + 30838 0.69 0.38425
Target:  5'- aCGCuccUCCCGCUgGGcUGCGgCCGuuauGCGGg -3'
miRNA:   3'- -GCG---AGGGCGAgCUaACGUgGGU----UGCC- -5'
30457 3' -56.2 NC_006548.1 + 36219 0.69 0.38425
Target:  5'- ---cCCCGCcCGAccGCACCCcGCGGg -3'
miRNA:   3'- gcgaGGGCGaGCUaaCGUGGGuUGCC- -5'
30457 3' -56.2 NC_006548.1 + 33352 0.69 0.38425
Target:  5'- uGCUCCuCGCggcCGGagGuCugCCAACGGa -3'
miRNA:   3'- gCGAGG-GCGa--GCUaaC-GugGGUUGCC- -5'
30457 3' -56.2 NC_006548.1 + 32992 0.7 0.366479
Target:  5'- gGCUCCCGCUUGuaccccAUUcGCaccGCCCAguugACGGa -3'
miRNA:   3'- gCGAGGGCGAGC------UAA-CG---UGGGU----UGCC- -5'
30457 3' -56.2 NC_006548.1 + 9649 0.7 0.366479
Target:  5'- gCGCgCCgCGCUCGAUgcacugaucgcgUGCGCCCcuGGCGa -3'
miRNA:   3'- -GCGaGG-GCGAGCUA------------ACGUGGG--UUGCc -5'
30457 3' -56.2 NC_006548.1 + 2330 0.71 0.316641
Target:  5'- uCGUUCCUGUUCGucgGCugCgCGGCGGc -3'
miRNA:   3'- -GCGAGGGCGAGCuaaCGugG-GUUGCC- -5'
30457 3' -56.2 NC_006548.1 + 30914 0.72 0.286353
Target:  5'- uGCUgCCCGCauaaCGGccGCAgCCCAGCGGg -3'
miRNA:   3'- gCGA-GGGCGa---GCUaaCGU-GGGUUGCC- -5'
30457 3' -56.2 NC_006548.1 + 13744 0.73 0.245272
Target:  5'- cCGCgcggCCUGCUCGAUgGCGUCCAGcCGGu -3'
miRNA:   3'- -GCGa---GGGCGAGCUAaCGUGGGUU-GCC- -5'
30457 3' -56.2 NC_006548.1 + 23135 1.1 0.000507
Target:  5'- cCGCUCCCGCUCGAUUGCACCCAACGGc -3'
miRNA:   3'- -GCGAGGGCGAGCUAACGUGGGUUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.