miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30458 5' -61.5 NC_006548.1 + 7713 0.66 0.289836
Target:  5'- aGgcGCCCCuGCGCUuccuuguccucgcGGAGGucgcgcaGAGCCu -3'
miRNA:   3'- aCauCGGGGcCGCGA-------------CCUCC-------UUCGGc -5'
30458 5' -61.5 NC_006548.1 + 18898 0.66 0.283411
Target:  5'- cGUGGCCaaggacgucaaggCaggaaaacuggUGGUGCUGGAGGGAGCg- -3'
miRNA:   3'- aCAUCGG-------------G-----------GCCGCGACCUCCUUCGgc -5'
30458 5' -61.5 NC_006548.1 + 5309 0.66 0.277099
Target:  5'- --gAGCCUCGGCGUUGGcGc--GCCGg -3'
miRNA:   3'- acaUCGGGGCCGCGACCuCcuuCGGC- -5'
30458 5' -61.5 NC_006548.1 + 3629 0.67 0.269537
Target:  5'- ---cGCCUCGGCGCUcagcgucauggucGGGGcuGAAGCCu -3'
miRNA:   3'- acauCGGGGCCGCGA-------------CCUC--CUUCGGc -5'
30458 5' -61.5 NC_006548.1 + 14292 0.67 0.237865
Target:  5'- aUGUAGgCCCGGaC-CUGGuccGGuAGCCGg -3'
miRNA:   3'- -ACAUCgGGGCC-GcGACCu--CCuUCGGC- -5'
30458 5' -61.5 NC_006548.1 + 29368 0.68 0.231796
Target:  5'- -aUGGCaCCCuGuCGCUGcAGGAGGCCGc -3'
miRNA:   3'- acAUCG-GGGcC-GCGACcUCCUUCGGC- -5'
30458 5' -61.5 NC_006548.1 + 22544 0.68 0.225859
Target:  5'- --cAGCCgCCGGCGgaGGAG--AGCCu -3'
miRNA:   3'- acaUCGG-GGCCGCgaCCUCcuUCGGc -5'
30458 5' -61.5 NC_006548.1 + 17617 0.69 0.182883
Target:  5'- -aUGGCCgaGGgGCUGGAGGcagcucaccuGGCCGg -3'
miRNA:   3'- acAUCGGggCCgCGACCUCCu---------UCGGC- -5'
30458 5' -61.5 NC_006548.1 + 17868 0.72 0.105657
Target:  5'- ---uGCCCCGGCGCUGacgaAGGAccggucguuAGCCGc -3'
miRNA:   3'- acauCGGGGCCGCGACc---UCCU---------UCGGC- -5'
30458 5' -61.5 NC_006548.1 + 23391 1.07 0.000185
Target:  5'- cUGUAGCCCCGGCGCUGGAGGAAGCCGu -3'
miRNA:   3'- -ACAUCGGGGCCGCGACCUCCUUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.