miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30459 3' -52 NC_006548.1 + 4577 0.66 0.785621
Target:  5'- cGGCAUCcaGGCgCUGAUCgaGCGCcuGAGCa -3'
miRNA:   3'- cUCGUGGaaCUG-GACUAG--UGCG--UUCG- -5'
30459 3' -52 NC_006548.1 + 36267 0.66 0.785621
Target:  5'- aGGCGCCgu-ACCgUGAUCuCGCGgcGGCa -3'
miRNA:   3'- cUCGUGGaacUGG-ACUAGuGCGU--UCG- -5'
30459 3' -52 NC_006548.1 + 29950 0.66 0.775061
Target:  5'- cAGCGCCg-GACCa-GUCAUGCAGcGCa -3'
miRNA:   3'- cUCGUGGaaCUGGacUAGUGCGUU-CG- -5'
30459 3' -52 NC_006548.1 + 17115 0.66 0.775061
Target:  5'- cGAGCccgACCUUGGCgaUGGUCGCGUc--- -3'
miRNA:   3'- -CUCG---UGGAACUGg-ACUAGUGCGuucg -5'
30459 3' -52 NC_006548.1 + 34960 0.66 0.775061
Target:  5'- cGAGCugGCCcUGcGCCUGGUCagccACGCAcguGCg -3'
miRNA:   3'- -CUCG--UGGaAC-UGGACUAG----UGCGUu--CG- -5'
30459 3' -52 NC_006548.1 + 20953 0.66 0.768644
Target:  5'- cAGCACCUcggccgccggcuuugUGACCUGGcCGuCGCccucGGCg -3'
miRNA:   3'- cUCGUGGA---------------ACUGGACUaGU-GCGu---UCG- -5'
30459 3' -52 NC_006548.1 + 25283 0.66 0.764334
Target:  5'- cGGCGuCCUUGccGCCcaccauucgcUGGUCGCGCA-GCu -3'
miRNA:   3'- cUCGU-GGAAC--UGG----------ACUAGUGCGUuCG- -5'
30459 3' -52 NC_006548.1 + 14288 0.66 0.753454
Target:  5'- aGGC-CCg-GACCUGGUC-CGguAGCc -3'
miRNA:   3'- cUCGuGGaaCUGGACUAGuGCguUCG- -5'
30459 3' -52 NC_006548.1 + 12532 0.66 0.753454
Target:  5'- cGGCGCCgaccagcUGGCCUGGUUcgauucCGuCGAGCg -3'
miRNA:   3'- cUCGUGGa------ACUGGACUAGu-----GC-GUUCG- -5'
30459 3' -52 NC_006548.1 + 31646 0.66 0.753454
Target:  5'- -uGCGCCUggaUGGCCUGGauggcggccccUCGCcCGAGUg -3'
miRNA:   3'- cuCGUGGA---ACUGGACU-----------AGUGcGUUCG- -5'
30459 3' -52 NC_006548.1 + 31914 0.66 0.753454
Target:  5'- -cGCGCCUgggGACUcGAUCACGaCGgaaccgacaccuGGCg -3'
miRNA:   3'- cuCGUGGAa--CUGGaCUAGUGC-GU------------UCG- -5'
30459 3' -52 NC_006548.1 + 7097 0.66 0.753454
Target:  5'- uGAuCACCagGGCCUcGUCACGCcccAGGCg -3'
miRNA:   3'- -CUcGUGGaaCUGGAcUAGUGCG---UUCG- -5'
30459 3' -52 NC_006548.1 + 32774 0.66 0.753454
Target:  5'- uGGGCGCUgccggugUGGCCgGAcauccagcugCugGCAAGCg -3'
miRNA:   3'- -CUCGUGGa------ACUGGaCUa---------GugCGUUCG- -5'
30459 3' -52 NC_006548.1 + 13350 0.67 0.731292
Target:  5'- cGGCGCCgagggcgGugUUGAagUCGCGCAcccAGCc -3'
miRNA:   3'- cUCGUGGaa-----CugGACU--AGUGCGU---UCG- -5'
30459 3' -52 NC_006548.1 + 35942 0.67 0.708683
Target:  5'- --aCGCCgccGGCCgcgcgGAUCGCGCcGGCa -3'
miRNA:   3'- cucGUGGaa-CUGGa----CUAGUGCGuUCG- -5'
30459 3' -52 NC_006548.1 + 6243 0.67 0.708683
Target:  5'- uGGGCGCCUUGAUCaguUGGUC-CGCccggauGGUc -3'
miRNA:   3'- -CUCGUGGAACUGG---ACUAGuGCGu-----UCG- -5'
30459 3' -52 NC_006548.1 + 20766 0.67 0.697246
Target:  5'- cGAGUucGCCgaaGGCCUGGUCAagGCcGGCc -3'
miRNA:   3'- -CUCG--UGGaa-CUGGACUAGUg-CGuUCG- -5'
30459 3' -52 NC_006548.1 + 13630 0.67 0.685737
Target:  5'- cAGCAgCUUGccGCCgcc-CGCGCAGGCa -3'
miRNA:   3'- cUCGUgGAAC--UGGacuaGUGCGUUCG- -5'
30459 3' -52 NC_006548.1 + 36651 0.67 0.684583
Target:  5'- cGAGCACCgcggugccGGCCgcggcguUGAUCGCGuCGAcGCg -3'
miRNA:   3'- -CUCGUGGaa------CUGG-------ACUAGUGC-GUU-CG- -5'
30459 3' -52 NC_006548.1 + 32158 0.68 0.67417
Target:  5'- cAGCGCCUcGACCUuGG-CugGCA-GCu -3'
miRNA:   3'- cUCGUGGAaCUGGA-CUaGugCGUuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.