miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30460 3' -62.5 NC_006548.1 + 23645 0.66 0.27836
Target:  5'- aGGguGUCGUGgcugaaGGUGCgaGCgGGcGCCa -3'
miRNA:   3'- aCCguCAGCGC------UCGCGgaCGgUC-CGG- -5'
30460 3' -62.5 NC_006548.1 + 22770 0.66 0.277666
Target:  5'- cGGCggAGUCGCcuuugcgGAuCGCCgacgagGCCGGGCg -3'
miRNA:   3'- aCCG--UCAGCG-------CUcGCGGa-----CGGUCCGg -5'
30460 3' -62.5 NC_006548.1 + 19619 0.66 0.271481
Target:  5'- -uGCAGcgcgcgcucCGCGAacGCGCCUGaaAGGCCc -3'
miRNA:   3'- acCGUCa--------GCGCU--CGCGGACggUCCGG- -5'
30460 3' -62.5 NC_006548.1 + 4577 0.66 0.271481
Target:  5'- cGGCAuccaggCGCugaucGAGCGCCUGagcaCCAgcGGCCg -3'
miRNA:   3'- aCCGUca----GCG-----CUCGCGGAC----GGU--CCGG- -5'
30460 3' -62.5 NC_006548.1 + 7324 0.66 0.271481
Target:  5'- cGGCAGcuacaGAGCGCCgGUCAGGg- -3'
miRNA:   3'- aCCGUCagcg-CUCGCGGaCGGUCCgg -5'
30460 3' -62.5 NC_006548.1 + 11970 0.66 0.271481
Target:  5'- aGGaCGaUCaGCGAGCGgCgcaGCCAGGCa -3'
miRNA:   3'- aCC-GUcAG-CGCUCGCgGa--CGGUCCGg -5'
30460 3' -62.5 NC_006548.1 + 12588 0.66 0.264741
Target:  5'- aGGcCAGcUgGUcGGCGCCggaUGCCgAGGCCa -3'
miRNA:   3'- aCC-GUC-AgCGcUCGCGG---ACGG-UCCGG- -5'
30460 3' -62.5 NC_006548.1 + 13530 0.66 0.264074
Target:  5'- gUGGCAGUUGaucacucugcugcUGAccuuccucgGUGCCUGCgCGGGCg -3'
miRNA:   3'- -ACCGUCAGC-------------GCU---------CGCGGACG-GUCCGg -5'
30460 3' -62.5 NC_006548.1 + 10107 0.66 0.258136
Target:  5'- cGGCuccugaugCGCucGCGCUUGCUgcguGGGCCa -3'
miRNA:   3'- aCCGuca-----GCGcuCGCGGACGG----UCCGG- -5'
30460 3' -62.5 NC_006548.1 + 29177 0.66 0.258136
Target:  5'- cGGcCAGuUCGCugacGAGaccgGCCUGCUGGGCg -3'
miRNA:   3'- aCC-GUC-AGCG----CUCg---CGGACGGUCCGg -5'
30460 3' -62.5 NC_006548.1 + 12545 0.66 0.257483
Target:  5'- cUGGCcuGGUucgauucCGuCGAGCGCUUcaacGCCGGGCg -3'
miRNA:   3'- -ACCG--UCA-------GC-GCUCGCGGA----CGGUCCGg -5'
30460 3' -62.5 NC_006548.1 + 23919 0.66 0.253593
Target:  5'- cGGUAGUUGCGAaccgcgacggugaugGCgaagugcacguuuGCCaucUGCCGGGUCg -3'
miRNA:   3'- aCCGUCAGCGCU---------------CG-------------CGG---ACGGUCCGG- -5'
30460 3' -62.5 NC_006548.1 + 21254 0.66 0.245332
Target:  5'- cGGCAGcC-UGGGCG---GCCAGGCCg -3'
miRNA:   3'- aCCGUCaGcGCUCGCggaCGGUCCGG- -5'
30460 3' -62.5 NC_006548.1 + 22670 0.67 0.241594
Target:  5'- cGGCAGUUcgGCGAGCGgaacgauagcgccguCCUggaguugaacGCC-GGCCa -3'
miRNA:   3'- aCCGUCAG--CGCUCGC---------------GGA----------CGGuCCGG- -5'
30460 3' -62.5 NC_006548.1 + 31729 0.67 0.239129
Target:  5'- cGGCAGcCacucggGCGAGgggcCGCCauCCAGGCCa -3'
miRNA:   3'- aCCGUCaG------CGCUC----GCGGacGGUCCGG- -5'
30460 3' -62.5 NC_006548.1 + 12832 0.67 0.239129
Target:  5'- cGGUaggaAGUCGCGAcUGCCUGCgAacaGCCg -3'
miRNA:   3'- aCCG----UCAGCGCUcGCGGACGgUc--CGG- -5'
30460 3' -62.5 NC_006548.1 + 33060 0.67 0.23366
Target:  5'- gGGCGGUgcgaaugggguacaaGCGGGaGCCggccgGCCAGcGCCg -3'
miRNA:   3'- aCCGUCAg--------------CGCUCgCGGa----CGGUC-CGG- -5'
30460 3' -62.5 NC_006548.1 + 36877 0.67 0.233059
Target:  5'- cGGUGugcugaccguGUCGUGGGCGCaccgcaaccggCUGCUgcAGGCCg -3'
miRNA:   3'- aCCGU----------CAGCGCUCGCG-----------GACGG--UCCGG- -5'
30460 3' -62.5 NC_006548.1 + 17457 0.67 0.227118
Target:  5'- cGGUGGaaggCGUcGGCGCCgugGCCucGGCCu -3'
miRNA:   3'- aCCGUCa---GCGcUCGCGGa--CGGu-CCGG- -5'
30460 3' -62.5 NC_006548.1 + 20845 0.67 0.227118
Target:  5'- cGGCAGcagGCG-GCcgGCCuUGaCCAGGCCu -3'
miRNA:   3'- aCCGUCag-CGCuCG--CGG-AC-GGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.