miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30460 3' -62.5 NC_006548.1 + 24031 1.11 0.000073
Target:  5'- uUGGCAGUCGCGAGCGCCUGCCAGGCCg -3'
miRNA:   3'- -ACCGUCAGCGCUCGCGGACGGUCCGG- -5'
30460 3' -62.5 NC_006548.1 + 28616 0.81 0.019012
Target:  5'- cGGUAGUCGCGgguAGCGCCgcgaccugGCCGGcGCCg -3'
miRNA:   3'- aCCGUCAGCGC---UCGCGGa-------CGGUC-CGG- -5'
30460 3' -62.5 NC_006548.1 + 24313 0.76 0.046653
Target:  5'- gGGCcgGGUCugggccgGCGAGCGCCUGCCcaauGGCa -3'
miRNA:   3'- aCCG--UCAG-------CGCUCGCGGACGGu---CCGg -5'
30460 3' -62.5 NC_006548.1 + 28512 0.76 0.04774
Target:  5'- aUGGCAGgaccagCGUGAcgcaguccugcucgGCGCCgGCCAGGUCg -3'
miRNA:   3'- -ACCGUCa-----GCGCU--------------CGCGGaCGGUCCGG- -5'
30460 3' -62.5 NC_006548.1 + 13109 0.75 0.054022
Target:  5'- -aGCAgGUCGCGcGCGCCaaCCAGGCCg -3'
miRNA:   3'- acCGU-CAGCGCuCGCGGacGGUCCGG- -5'
30460 3' -62.5 NC_006548.1 + 22303 0.74 0.064143
Target:  5'- gUGGUgccGUUGCGGGUGUCgGCCAGGCg -3'
miRNA:   3'- -ACCGu--CAGCGCUCGCGGaCGGUCCGg -5'
30460 3' -62.5 NC_006548.1 + 2341 0.74 0.067907
Target:  5'- aUGGCAGcacacuugaGCGAGgCGCacccGCCAGGCCg -3'
miRNA:   3'- -ACCGUCag-------CGCUC-GCGga--CGGUCCGG- -5'
30460 3' -62.5 NC_006548.1 + 31632 0.72 0.087635
Target:  5'- cGGUGGUUGCGuauuGCGCCUGgauGGCCu -3'
miRNA:   3'- aCCGUCAGCGCu---CGCGGACgguCCGG- -5'
30460 3' -62.5 NC_006548.1 + 37335 0.72 0.092708
Target:  5'- gGGCGcGUCGCcacGCuGCCgacuagcgGCCAGGCCg -3'
miRNA:   3'- aCCGU-CAGCGcu-CG-CGGa-------CGGUCCGG- -5'
30460 3' -62.5 NC_006548.1 + 2945 0.72 0.100842
Target:  5'- aUGGCcGacaacaucgccuUCGaCGAGCGCCUGCaggcGGCCa -3'
miRNA:   3'- -ACCGuC------------AGC-GCUCGCGGACGgu--CCGG- -5'
30460 3' -62.5 NC_006548.1 + 12774 0.72 0.102835
Target:  5'- aGGCAGUCGCGAcuuccuaccgGCaCCUgagcuguauugcucGCCAGuGCCg -3'
miRNA:   3'- aCCGUCAGCGCU----------CGcGGA--------------CGGUC-CGG- -5'
30460 3' -62.5 NC_006548.1 + 36016 0.72 0.1037
Target:  5'- -uGCAGUCGCGcGCcgccacCCUGCC-GGCCa -3'
miRNA:   3'- acCGUCAGCGCuCGc-----GGACGGuCCGG- -5'
30460 3' -62.5 NC_006548.1 + 32465 0.71 0.106634
Target:  5'- cGGCGG-CGaCG-GCuGCCgGCCAGGCUg -3'
miRNA:   3'- aCCGUCaGC-GCuCG-CGGaCGGUCCGG- -5'
30460 3' -62.5 NC_006548.1 + 27215 0.71 0.11591
Target:  5'- aUGGCGGUggacugCGCuuGAGCGCUaucgcGCCAGGCa -3'
miRNA:   3'- -ACCGUCA------GCG--CUCGCGGa----CGGUCCGg -5'
30460 3' -62.5 NC_006548.1 + 7774 0.7 0.133058
Target:  5'- aGGacaAGgaagCGCagGGGCGCCUGCU-GGCCa -3'
miRNA:   3'- aCCg--UCa---GCG--CUCGCGGACGGuCCGG- -5'
30460 3' -62.5 NC_006548.1 + 37550 0.7 0.144441
Target:  5'- cGGCGGUUGggcUGAGUGgaCUGUgGGGCCa -3'
miRNA:   3'- aCCGUCAGC---GCUCGCg-GACGgUCCGG- -5'
30460 3' -62.5 NC_006548.1 + 1936 0.7 0.144441
Target:  5'- gGuGCAGcCGCGcGCGCUUGCCcgcGGCa -3'
miRNA:   3'- aC-CGUCaGCGCuCGCGGACGGu--CCGg -5'
30460 3' -62.5 NC_006548.1 + 28214 0.69 0.157131
Target:  5'- cGGCGGUUGUgGAGgGCCUGaaucuccugaucaaGGGCCu -3'
miRNA:   3'- aCCGUCAGCG-CUCgCGGACgg------------UCCGG- -5'
30460 3' -62.5 NC_006548.1 + 22901 0.69 0.169907
Target:  5'- cUGGCgauucAGUCGCGcGGCgGCgaGUUGGGCCg -3'
miRNA:   3'- -ACCG-----UCAGCGC-UCG-CGgaCGGUCCGG- -5'
30460 3' -62.5 NC_006548.1 + 28150 0.68 0.174524
Target:  5'- aGGCGGU--UGAGUucgGCCUGC-AGGCCg -3'
miRNA:   3'- aCCGUCAgcGCUCG---CGGACGgUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.