miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30461 3' -51.1 NC_006548.1 + 30408 0.65 0.863421
Target:  5'- uGUAGAUggCGUCGgugccgcccaggccAGGGGCGcGCaGAGUCa -3'
miRNA:   3'- -CGUCUA--GCAGC--------------UCCUUGC-CGaCUUAG- -5'
30461 3' -51.1 NC_006548.1 + 30188 0.66 0.848474
Target:  5'- aGUAGuugucgugcUCGUUGAGGAucGCGGCUuaguGUCa -3'
miRNA:   3'- -CGUCu--------AGCAGCUCCU--UGCCGAcu--UAG- -5'
30461 3' -51.1 NC_006548.1 + 36271 0.66 0.820355
Target:  5'- uGCGG-UCGggCGGGGuccaguucGGCGGCUGGAc- -3'
miRNA:   3'- -CGUCuAGCa-GCUCC--------UUGCCGACUUag -5'
30461 3' -51.1 NC_006548.1 + 16400 0.66 0.820355
Target:  5'- cGCAGGUCGUUGccGccACGGCgcugcaGGAUCg -3'
miRNA:   3'- -CGUCUAGCAGCucCu-UGCCGa-----CUUAG- -5'
30461 3' -51.1 NC_006548.1 + 7082 0.66 0.820355
Target:  5'- uGCuGAUgCgGUCGAGGAucuucgcgccaGCGGCUuGAUCc -3'
miRNA:   3'- -CGuCUA-G-CAGCUCCU-----------UGCCGAcUUAG- -5'
30461 3' -51.1 NC_006548.1 + 18555 0.66 0.819382
Target:  5'- cGCAGAcCGUUGAGGGcaugagcGCaGCUGGcgUg -3'
miRNA:   3'- -CGUCUaGCAGCUCCU-------UGcCGACUuaG- -5'
30461 3' -51.1 NC_006548.1 + 18778 0.67 0.77985
Target:  5'- uGCGGcUgGgCGAGGAucuGCGGCaGggUCg -3'
miRNA:   3'- -CGUCuAgCaGCUCCU---UGCCGaCuuAG- -5'
30461 3' -51.1 NC_006548.1 + 32370 0.67 0.769267
Target:  5'- cGCAGAUCGaucgCGAGGAcgccgAUGGC---AUCa -3'
miRNA:   3'- -CGUCUAGCa---GCUCCU-----UGCCGacuUAG- -5'
30461 3' -51.1 NC_006548.1 + 25135 0.67 0.769267
Target:  5'- -uGGAUCGgUGGccGGGGCgGGCUGggUCu -3'
miRNA:   3'- cgUCUAGCaGCU--CCUUG-CCGACuuAG- -5'
30461 3' -51.1 NC_006548.1 + 30061 0.69 0.680083
Target:  5'- aCGGAUCGUCGAuggcgccuGGAGuaaGGCUGGGc- -3'
miRNA:   3'- cGUCUAGCAGCU--------CCUUg--CCGACUUag -5'
30461 3' -51.1 NC_006548.1 + 33587 0.71 0.541969
Target:  5'- cGCuGA-CGUCGAGGAuGCGGCggugGAAg- -3'
miRNA:   3'- -CGuCUaGCAGCUCCU-UGCCGa---CUUag -5'
30461 3' -51.1 NC_006548.1 + 25272 1.13 0.000949
Target:  5'- uGCAGAUCGUCGAGGAACGGCUGAAUCg -3'
miRNA:   3'- -CGUCUAGCAGCUCCUUGCCGACUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.