miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30461 5' -55.3 NC_006548.1 + 7199 0.66 0.563825
Target:  5'- aCAGCgau-GCCag-CGACAGGCCCAg -3'
miRNA:   3'- -GUCGaaguCGGggaGCUGUUUGGGUa -5'
30461 5' -55.3 NC_006548.1 + 16085 0.66 0.530192
Target:  5'- -uGCUUcCGGCCUggUCGACAuGCCCAUc -3'
miRNA:   3'- guCGAA-GUCGGGg-AGCUGUuUGGGUA- -5'
30461 5' -55.3 NC_006548.1 + 14379 0.66 0.530192
Target:  5'- cCGGCUUCGGCCUggCUCGGgAAcugcGCCUg- -3'
miRNA:   3'- -GUCGAAGUCGGG--GAGCUgUU----UGGGua -5'
30461 5' -55.3 NC_006548.1 + 17481 0.67 0.51914
Target:  5'- aCGGCUgaUCG--CCCUCGGCGAACUCGg -3'
miRNA:   3'- -GUCGA--AGUcgGGGAGCUGUUUGGGUa -5'
30461 5' -55.3 NC_006548.1 + 20939 0.68 0.453956
Target:  5'- cCGGCUUUgugaccuGGCcgucgCCCUCGGCGAACuCCAg -3'
miRNA:   3'- -GUCGAAG-------UCG-----GGGAGCUGUUUG-GGUa -5'
30461 5' -55.3 NC_006548.1 + 14310 0.69 0.404955
Target:  5'- uCGGCcaggcGCCCCUCGAUguAGGCCCGg -3'
miRNA:   3'- -GUCGaagu-CGGGGAGCUG--UUUGGGUa -5'
30461 5' -55.3 NC_006548.1 + 35135 0.7 0.324164
Target:  5'- cCAGCUcauccaaCGGCCCCcUGGCaAAACCCAUg -3'
miRNA:   3'- -GUCGAa------GUCGGGGaGCUG-UUUGGGUA- -5'
30461 5' -55.3 NC_006548.1 + 3703 0.7 0.315964
Target:  5'- aGGCUUCAGCCCCgaccaUGACGcugAGCgCCGa -3'
miRNA:   3'- gUCGAAGUCGGGGa----GCUGU---UUG-GGUa -5'
30461 5' -55.3 NC_006548.1 + 28962 0.71 0.300037
Target:  5'- uCGGCgcCGGCCgCCUCGACGguuuggccgguGGCCCGa -3'
miRNA:   3'- -GUCGaaGUCGG-GGAGCUGU-----------UUGGGUa -5'
30461 5' -55.3 NC_006548.1 + 17678 0.74 0.178772
Target:  5'- gAGCUgccucCAGCCCCUCGGCcauGGCCUg- -3'
miRNA:   3'- gUCGAa----GUCGGGGAGCUGu--UUGGGua -5'
30461 5' -55.3 NC_006548.1 + 25238 1.06 0.000828
Target:  5'- gCAGCUUCAGCCCCUCGACAAACCCAUa -3'
miRNA:   3'- -GUCGAAGUCGGGGAGCUGUUUGGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.