miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30463 3' -61 NC_006548.1 + 17289 0.66 0.337547
Target:  5'- -cCCGUggCGGCugCGcGCCG-GGGAAGu -3'
miRNA:   3'- uaGGCG--GCCGugGC-CGGCaUCCUUCu -5'
30463 3' -61 NC_006548.1 + 8458 0.66 0.321608
Target:  5'- ---gGCCGGC-CUGGCCGagcgUAGaGAAGAc -3'
miRNA:   3'- uaggCGGCCGuGGCCGGC----AUC-CUUCU- -5'
30463 3' -61 NC_006548.1 + 15217 0.66 0.321608
Target:  5'- cGUCCGCCGcGCuuGCCGGCCugcgcGUccGGGuugcuGGAc -3'
miRNA:   3'- -UAGGCGGC-CG--UGGCCGG-----CA--UCCu----UCU- -5'
30463 3' -61 NC_006548.1 + 22595 0.66 0.313852
Target:  5'- cUCCGCCGGCggcugugcGCCGGuaGUGGuuGGu -3'
miRNA:   3'- uAGGCGGCCG--------UGGCCggCAUCcuUCu -5'
30463 3' -61 NC_006548.1 + 30846 0.67 0.284251
Target:  5'- -cCCGCUgGGCugCGGCCGUuaugcGGGcAGc -3'
miRNA:   3'- uaGGCGG-CCGugGCCGGCA-----UCCuUCu -5'
30463 3' -61 NC_006548.1 + 21349 0.67 0.277205
Target:  5'- -cUCGaCCGGCGCCaGGCCGgaacGGAuGAc -3'
miRNA:   3'- uaGGC-GGCCGUGG-CCGGCau--CCUuCU- -5'
30463 3' -61 NC_006548.1 + 28533 0.67 0.256901
Target:  5'- aGUCCuGCuCGGCGCCGGCC--AGGucGc -3'
miRNA:   3'- -UAGG-CG-GCCGUGGCCGGcaUCCuuCu -5'
30463 3' -61 NC_006548.1 + 35997 0.67 0.256901
Target:  5'- -cCUGCCGGCcaacucGCCGGUCgGUAGGcccGGAu -3'
miRNA:   3'- uaGGCGGCCG------UGGCCGG-CAUCCu--UCU- -5'
30463 3' -61 NC_006548.1 + 26120 0.68 0.21996
Target:  5'- -aCgGCCGGUGCCGGCgGauguGGAAGu -3'
miRNA:   3'- uaGgCGGCCGUGGCCGgCau--CCUUCu -5'
30463 3' -61 NC_006548.1 + 24372 0.69 0.208693
Target:  5'- -cUCGCCGGCccagacCCGGCCcu-GGAAGGa -3'
miRNA:   3'- uaGGCGGCCGu-----GGCCGGcauCCUUCU- -5'
30463 3' -61 NC_006548.1 + 5629 0.69 0.208143
Target:  5'- ---aGCCGGC-CCGGCCuggccugcgcguaGUAGGAGGc -3'
miRNA:   3'- uaggCGGCCGuGGCCGG-------------CAUCCUUCu -5'
30463 3' -61 NC_006548.1 + 16120 0.69 0.205411
Target:  5'- aGUCCGCCGGCACaCGGaCgcagcucaaugacuaCGUcuccacuccGGGggGAa -3'
miRNA:   3'- -UAGGCGGCCGUG-GCC-G---------------GCA---------UCCuuCU- -5'
30463 3' -61 NC_006548.1 + 21810 0.71 0.139161
Target:  5'- uAUCCGCCugcGGCACCGGCgCGUccAGGccGu -3'
miRNA:   3'- -UAGGCGG---CCGUGGCCG-GCA--UCCuuCu -5'
30463 3' -61 NC_006548.1 + 33283 0.71 0.131681
Target:  5'- uUCCGuuGGCAgaccuCCGGCCGcgAGGAGc- -3'
miRNA:   3'- uAGGCggCCGU-----GGCCGGCa-UCCUUcu -5'
30463 3' -61 NC_006548.1 + 26177 1.06 0.000251
Target:  5'- cAUCCGCCGGCACCGGCCGUAGGAAGAa -3'
miRNA:   3'- -UAGGCGGCCGUGGCCGGCAUCCUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.