miRNA display CGI


Results 1 - 9 of 9 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30464 3' -52.1 NC_006548.1 + 28190 0.66 0.793956
Target:  5'- aCCUGCGuGaUgUGCUGAaAGAUCCg- -3'
miRNA:   3'- -GGACGUcCaAgACGACUaUCUAGGgu -5'
30464 3' -52.1 NC_006548.1 + 30557 0.66 0.773021
Target:  5'- gCC-GCAGGUUCUgGCUGGUcgucaAGGUCagCAc -3'
miRNA:   3'- -GGaCGUCCAAGA-CGACUA-----UCUAGg-GU- -5'
30464 3' -52.1 NC_006548.1 + 30782 0.66 0.773021
Target:  5'- --cGUAGGggCUGCUGAUGc--CCCGg -3'
miRNA:   3'- ggaCGUCCaaGACGACUAUcuaGGGU- -5'
30464 3' -52.1 NC_006548.1 + 7683 0.66 0.751438
Target:  5'- uUCUGCAGGUUCUcGgUGGUguuggccagcaGGcgCCCc -3'
miRNA:   3'- -GGACGUCCAAGA-CgACUA-----------UCuaGGGu -5'
30464 3' -52.1 NC_006548.1 + 27077 0.66 0.751438
Target:  5'- -aUGCGGGccgUCUGCUGAUcggcGGAcUCgCCGa -3'
miRNA:   3'- ggACGUCCa--AGACGACUA----UCU-AG-GGU- -5'
30464 3' -52.1 NC_006548.1 + 25681 0.68 0.660761
Target:  5'- gCUGCAGGaUCUGCUGAaguaaggaAGggCaCCAg -3'
miRNA:   3'- gGACGUCCaAGACGACUa-------UCuaG-GGU- -5'
30464 3' -52.1 NC_006548.1 + 22109 0.69 0.602684
Target:  5'- uCCUGCAGGagCUGCUGGaacUGGA-CgCGa -3'
miRNA:   3'- -GGACGUCCaaGACGACU---AUCUaGgGU- -5'
30464 3' -52.1 NC_006548.1 + 961 0.75 0.300657
Target:  5'- aCCUGCAGcUUCUGCcGAUAGAcaucgUCCUg -3'
miRNA:   3'- -GGACGUCcAAGACGaCUAUCU-----AGGGu -5'
30464 3' -52.1 NC_006548.1 + 26814 1.11 0.000854
Target:  5'- gCCUGCAGGUUCUGCUGAUAGAUCCCAg -3'
miRNA:   3'- -GGACGUCCAAGACGACUAUCUAGGGU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.