miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30465 5' -57 NC_006548.1 + 7163 0.66 0.455842
Target:  5'- cGCGCUcacGCaccuguacauccuUCAGCUUGCGGUaCAGCg- -3'
miRNA:   3'- cUGCGA---CG-------------AGUCGAAUGCCG-GUCGaa -5'
30465 5' -57 NC_006548.1 + 20911 0.66 0.446584
Target:  5'- -gUGCUGCgCAGCUUGCuGGCCGa--- -3'
miRNA:   3'- cuGCGACGaGUCGAAUG-CCGGUcgaa -5'
30465 5' -57 NC_006548.1 + 37102 0.66 0.426392
Target:  5'- -gUGCUGUUCAGCguucgcgACGGUCuGCa- -3'
miRNA:   3'- cuGCGACGAGUCGaa-----UGCCGGuCGaa -5'
30465 5' -57 NC_006548.1 + 9177 0.66 0.426392
Target:  5'- uGACGCUGUggcaaCAGCUUugccaACGGUgaaaaCAGCUa -3'
miRNA:   3'- -CUGCGACGa----GUCGAA-----UGCCG-----GUCGAa -5'
30465 5' -57 NC_006548.1 + 32802 0.66 0.416502
Target:  5'- --aGCUGCUggcaAGCgucaccGCGGCCGGCg- -3'
miRNA:   3'- cugCGACGAg---UCGaa----UGCCGGUCGaa -5'
30465 5' -57 NC_006548.1 + 32386 0.66 0.416502
Target:  5'- gGACGCcgaugGCaUCAGCcuggcCGGCCAGCc- -3'
miRNA:   3'- -CUGCGa----CG-AGUCGaau--GCCGGUCGaa -5'
30465 5' -57 NC_006548.1 + 1191 0.66 0.416502
Target:  5'- aGGCGUUGCUgGccGCgcagACGGCCAGgCUc -3'
miRNA:   3'- -CUGCGACGAgU--CGaa--UGCCGGUC-GAa -5'
30465 5' -57 NC_006548.1 + 12583 0.66 0.416502
Target:  5'- --aGCUGgUCGGCgccggaUGCcgaGGCCAGCUUa -3'
miRNA:   3'- cugCGACgAGUCGa-----AUG---CCGGUCGAA- -5'
30465 5' -57 NC_006548.1 + 12085 0.67 0.406753
Target:  5'- uGCGCUgauGCUCcuGCUgcUGGCCGGCg- -3'
miRNA:   3'- cUGCGA---CGAGu-CGAauGCCGGUCGaa -5'
30465 5' -57 NC_006548.1 + 29906 0.67 0.397149
Target:  5'- cGGCGCUGUgCGGCacgcgACGGgCGGCa- -3'
miRNA:   3'- -CUGCGACGaGUCGaa---UGCCgGUCGaa -5'
30465 5' -57 NC_006548.1 + 9521 0.68 0.342679
Target:  5'- gGAgGCUGCUCugguGCgcguCGGCCAGgUg -3'
miRNA:   3'- -CUgCGACGAGu---CGaau-GCCGGUCgAa -5'
30465 5' -57 NC_006548.1 + 16542 0.68 0.342679
Target:  5'- aGAUGCUGUUCGGCguguucUACGGUUAcGCg- -3'
miRNA:   3'- -CUGCGACGAGUCGa-----AUGCCGGU-CGaa -5'
30465 5' -57 NC_006548.1 + 20850 0.68 0.334141
Target:  5'- uGGCGCgg--CAGCagGCGGCCGGCc- -3'
miRNA:   3'- -CUGCGacgaGUCGaaUGCCGGUCGaa -5'
30465 5' -57 NC_006548.1 + 22817 0.68 0.32576
Target:  5'- -gUGCUGCUCAGCg-ACGGUUcGCUg -3'
miRNA:   3'- cuGCGACGAGUCGaaUGCCGGuCGAa -5'
30465 5' -57 NC_006548.1 + 29487 0.68 0.309469
Target:  5'- -cUGCUGCgCGGCaacguCGGCCAGCg- -3'
miRNA:   3'- cuGCGACGaGUCGaau--GCCGGUCGaa -5'
30465 5' -57 NC_006548.1 + 28527 0.7 0.230955
Target:  5'- uGACGCaguccUGCUCGGCgc-CGGCCAGg-- -3'
miRNA:   3'- -CUGCG-----ACGAGUCGaauGCCGGUCgaa -5'
30465 5' -57 NC_006548.1 + 17534 0.71 0.224718
Target:  5'- cGACagGCUGCaUC-GCUU-CGGCCAGCUg -3'
miRNA:   3'- -CUG--CGACG-AGuCGAAuGCCGGUCGAa -5'
30465 5' -57 NC_006548.1 + 14668 0.71 0.224718
Target:  5'- aGGCGCUGCUC-GCUgagcagaaGGCCAaGCUg -3'
miRNA:   3'- -CUGCGACGAGuCGAaug-----CCGGU-CGAa -5'
30465 5' -57 NC_006548.1 + 25633 0.71 0.206862
Target:  5'- cGACGCUGUUCGGCUUcAUGGagCAGUa- -3'
miRNA:   3'- -CUGCGACGAGUCGAA-UGCCg-GUCGaa -5'
30465 5' -57 NC_006548.1 + 33317 0.71 0.205145
Target:  5'- cGGCGCUGCgCAGCcUGCuguacgcccugcguGGCCGGCa- -3'
miRNA:   3'- -CUGCGACGaGUCGaAUG--------------CCGGUCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.