miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30466 3' -56.7 NC_006548.1 + 15825 0.66 0.512469
Target:  5'- -aUGCGCUcacAGCGCUGgaaccaGgGCCAGa -3'
miRNA:   3'- ugACGCGAac-UCGCGAUag----CgCGGUC- -5'
30466 3' -56.7 NC_006548.1 + 28541 0.66 0.512469
Target:  5'- uCUGCGCUugugccuugcUGAGUGCUucuUCGUaucGCUGGa -3'
miRNA:   3'- uGACGCGA----------ACUCGCGAu--AGCG---CGGUC- -5'
30466 3' -56.7 NC_006548.1 + 30791 0.66 0.491064
Target:  5'- aGCUGCGCUcguagGGGCuGCUGaUGCcCCGGu -3'
miRNA:   3'- -UGACGCGAa----CUCG-CGAUaGCGcGGUC- -5'
30466 3' -56.7 NC_006548.1 + 34867 0.66 0.480517
Target:  5'- cACUGCGCagauGCGCUGUUGUGaugauCAGa -3'
miRNA:   3'- -UGACGCGaacuCGCGAUAGCGCg----GUC- -5'
30466 3' -56.7 NC_006548.1 + 6927 0.66 0.470081
Target:  5'- aGCUGUGC---AGCGCgcggcugAUCGCGCUg- -3'
miRNA:   3'- -UGACGCGaacUCGCGa------UAGCGCGGuc -5'
30466 3' -56.7 NC_006548.1 + 15773 0.68 0.363867
Target:  5'- --aGCGCUgUGAGCGCaucugcAUCGaCGCCAc -3'
miRNA:   3'- ugaCGCGA-ACUCGCGa-----UAGC-GCGGUc -5'
30466 3' -56.7 NC_006548.1 + 8031 0.69 0.321391
Target:  5'- cACUGaacaGUUggggauacaUGAGCGCgcagCGCGCCGGa -3'
miRNA:   3'- -UGACg---CGA---------ACUCGCGaua-GCGCGGUC- -5'
30466 3' -56.7 NC_006548.1 + 8587 0.71 0.254533
Target:  5'- cGCUGCGCguccuGCGCguucugAUCGCGCUg- -3'
miRNA:   3'- -UGACGCGaacu-CGCGa-----UAGCGCGGuc -5'
30466 3' -56.7 NC_006548.1 + 20655 0.71 0.247854
Target:  5'- aGCUGCGCUccagGAGCGCcaa--CGCCAGc -3'
miRNA:   3'- -UGACGCGAa---CUCGCGauagcGCGGUC- -5'
30466 3' -56.7 NC_006548.1 + 9592 0.72 0.199527
Target:  5'- --aGUGCaucGAGCGCgg-CGCGCCAGg -3'
miRNA:   3'- ugaCGCGaa-CUCGCGauaGCGCGGUC- -5'
30466 3' -56.7 NC_006548.1 + 27206 1.09 0.000364
Target:  5'- gACUGCGCUUGAGCGCUAUCGCGCCAGg -3'
miRNA:   3'- -UGACGCGAACUCGCGAUAGCGCGGUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.