miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30466 5' -55.1 NC_006548.1 + 18022 0.66 0.574633
Target:  5'- aCGCUaUGCACAGCuGCAggcgGucaaGGGCGa- -3'
miRNA:   3'- -GCGA-ACGUGUCGuCGUaa--C----UCCGCga -5'
30466 5' -55.1 NC_006548.1 + 2272 0.66 0.551915
Target:  5'- uGCUggaGCgACAGCuGCAga-AGGCGCg -3'
miRNA:   3'- gCGAa--CG-UGUCGuCGUaacUCCGCGa -5'
30466 5' -55.1 NC_006548.1 + 27248 0.66 0.540656
Target:  5'- aCGCgaGCACGcuCGGCAUUGugauAGGCGUUc -3'
miRNA:   3'- -GCGaaCGUGUc-GUCGUAAC----UCCGCGA- -5'
30466 5' -55.1 NC_006548.1 + 32854 0.66 0.526139
Target:  5'- aCGCUUGC-CAGCAGCug-GAuguccggccacaccGGCaGCg -3'
miRNA:   3'- -GCGAACGuGUCGUCGuaaCU--------------CCG-CGa -5'
30466 5' -55.1 NC_006548.1 + 20592 0.68 0.413582
Target:  5'- gGCUcuucCGCAGCGGCGgcaGAGGCuGCUg -3'
miRNA:   3'- gCGAac--GUGUCGUCGUaa-CUCCG-CGA- -5'
30466 5' -55.1 NC_006548.1 + 11746 0.69 0.394218
Target:  5'- gCGCggcGCGCGGCGGCGccGGGGuUGCg -3'
miRNA:   3'- -GCGaa-CGUGUCGUCGUaaCUCC-GCGa -5'
30466 5' -55.1 NC_006548.1 + 858 0.69 0.383821
Target:  5'- uCGCUUGCugGGCuGUgGUUGccagcccAGGCGCUu -3'
miRNA:   3'- -GCGAACGugUCGuCG-UAAC-------UCCGCGA- -5'
30466 5' -55.1 NC_006548.1 + 2331 0.69 0.375451
Target:  5'- uGCcgaagGCAUGGCAGCAcacuugagcGAGGCGCa -3'
miRNA:   3'- gCGaa---CGUGUCGUCGUaa-------CUCCGCGa -5'
30466 5' -55.1 NC_006548.1 + 33956 0.69 0.375451
Target:  5'- aGgUUGCGCAGCuGUAccGuGGCGCUc -3'
miRNA:   3'- gCgAACGUGUCGuCGUaaCuCCGCGA- -5'
30466 5' -55.1 NC_006548.1 + 12686 0.7 0.357298
Target:  5'- cCGCU--CAUAGCgaAGCAggaUGAGGCGCg -3'
miRNA:   3'- -GCGAacGUGUCG--UCGUa--ACUCCGCGa -5'
30466 5' -55.1 NC_006548.1 + 7230 0.7 0.348455
Target:  5'- aGCUgaaggaUGUACAGguGCGU-GAGcGCGCa -3'
miRNA:   3'- gCGA------ACGUGUCguCGUAaCUC-CGCGa -5'
30466 5' -55.1 NC_006548.1 + 6309 0.7 0.314662
Target:  5'- gGCUgUGUACGGCcgucGCAUUGAagugGGCGCg -3'
miRNA:   3'- gCGA-ACGUGUCGu---CGUAACU----CCGCGa -5'
30466 5' -55.1 NC_006548.1 + 27169 1.09 0.000517
Target:  5'- cCGCUUGCACAGCAGCAUUGAGGCGCUg -3'
miRNA:   3'- -GCGAACGUGUCGUCGUAACUCCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.