miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30467 3' -61.8 NC_006548.1 + 34351 0.68 0.219166
Target:  5'- cGCGGCauCGAGCaacacACGGGCaaccgccuggUCCuuguGGGCg -3'
miRNA:   3'- -CGCCGc-GCUCG-----UGCCCGa---------AGGu---CCCG- -5'
30467 3' -61.8 NC_006548.1 + 2010 0.68 0.2186
Target:  5'- aGCGGgguaugcCGCGGGCaagcgcGCGcGGCUgcaCCAGGGg -3'
miRNA:   3'- -CGCC-------GCGCUCG------UGC-CCGAa--GGUCCCg -5'
30467 3' -61.8 NC_006548.1 + 6504 0.69 0.196439
Target:  5'- gGCGGCGCGGGuUACGGGCUcggucgaaaacgCCcGGa- -3'
miRNA:   3'- -CGCCGCGCUC-GUGCCCGAa-----------GGuCCcg -5'
30467 3' -61.8 NC_006548.1 + 13378 0.69 0.191845
Target:  5'- uCGGCGCGcGCuccugcgGCGGGCaaaccggcgCCgAGGGCg -3'
miRNA:   3'- cGCCGCGCuCG-------UGCCCGaa-------GG-UCCCG- -5'
30467 3' -61.8 NC_006548.1 + 22145 0.69 0.187345
Target:  5'- uCGGCGa-AGCGCGGcugaacaucGCUcggCCGGGGCa -3'
miRNA:   3'- cGCCGCgcUCGUGCC---------CGAa--GGUCCCG- -5'
30467 3' -61.8 NC_006548.1 + 26087 0.69 0.177677
Target:  5'- uGCGGUcaGCGAG-GCGGcGCUuucccccuaUCCAGGGg -3'
miRNA:   3'- -CGCCG--CGCUCgUGCC-CGA---------AGGUCCCg -5'
30467 3' -61.8 NC_006548.1 + 22916 0.7 0.168455
Target:  5'- cGCGGCgGCGAGUugGGccggaCUaUCGGGGUg -3'
miRNA:   3'- -CGCCG-CGCUCGugCCc----GAaGGUCCCG- -5'
30467 3' -61.8 NC_006548.1 + 11763 0.7 0.168005
Target:  5'- aGCGuccagcuggucauGCGCG-GCGCGcGGCggcgCCGGGGUu -3'
miRNA:   3'- -CGC-------------CGCGCuCGUGC-CCGaa--GGUCCCG- -5'
30467 3' -61.8 NC_006548.1 + 36278 0.7 0.155426
Target:  5'- cGCGGgGUGcGguCGGGCggggUCCAGuucGGCg -3'
miRNA:   3'- -CGCCgCGCuCguGCCCGa---AGGUC---CCG- -5'
30467 3' -61.8 NC_006548.1 + 32718 0.71 0.148856
Target:  5'- aGgGGCGCGAGCGCGuGCUccucgaCCucagccuugcaggcuGGGGCg -3'
miRNA:   3'- -CgCCGCGCUCGUGCcCGAa-----GG---------------UCCCG- -5'
30467 3' -61.8 NC_006548.1 + 25162 0.73 0.097481
Target:  5'- cGauGCGCGAGUAUGGGUUUgUcgaGGGGCu -3'
miRNA:   3'- -CgcCGCGCUCGUGCCCGAAgG---UCCCG- -5'
30467 3' -61.8 NC_006548.1 + 19890 0.73 0.089646
Target:  5'- gGCGGCGUGAGUGCagGGGCUUUUc-GGCg -3'
miRNA:   3'- -CGCCGCGCUCGUG--CCCGAAGGucCCG- -5'
30467 3' -61.8 NC_006548.1 + 28828 1.12 9e-05
Target:  5'- gGCGGCGCGAGCACGGGCUUCCAGGGCu -3'
miRNA:   3'- -CGCCGCGCUCGUGCCCGAAGGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.