miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30468 5' -61.2 NC_006548.1 + 29412 1.08 0.000184
Target:  5'- gUGCCAUCGGCGAGACCGCGCAGCGCAu -3'
miRNA:   3'- -ACGGUAGCCGCUCUGGCGCGUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 2730 0.75 0.066385
Target:  5'- gGCCAUCGGCGAGGCUGUccaggucgugaGCaccaaGGCGUAc -3'
miRNA:   3'- aCGGUAGCCGCUCUGGCG-----------CG-----UCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 37832 0.75 0.070309
Target:  5'- aUGCCAggguUCGGUGAGGCCGacgacagaucaGCuGCGCAg -3'
miRNA:   3'- -ACGGU----AGCCGCUCUGGCg----------CGuCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 30822 0.74 0.076616
Target:  5'- aGCCAgcgccCGGCGGGAUCGCGgAGauaGCAg -3'
miRNA:   3'- aCGGUa----GCCGCUCUGGCGCgUCg--CGU- -5'
30468 5' -61.2 NC_006548.1 + 33390 0.72 0.113876
Target:  5'- gGCCAcgcagGGCGuacagcAGGCUGCGCAGCGCc -3'
miRNA:   3'- aCGGUag---CCGC------UCUGGCGCGUCGCGu -5'
30468 5' -61.2 NC_006548.1 + 28401 0.72 0.117105
Target:  5'- cGUCAUcacCGGCGGGACCGUuCAcGCGCGc -3'
miRNA:   3'- aCGGUA---GCCGCUCUGGCGcGU-CGCGU- -5'
30468 5' -61.2 NC_006548.1 + 33813 0.72 0.119416
Target:  5'- gGCCAUCGGCGAccGACCGCucgcgaucacugaaGCucaucGCGUAc -3'
miRNA:   3'- aCGGUAGCCGCU--CUGGCG--------------CGu----CGCGU- -5'
30468 5' -61.2 NC_006548.1 + 22953 0.71 0.127313
Target:  5'- gGCCGcCGGCcucaaGGACCGCuucaucguGCAGCGCGa -3'
miRNA:   3'- aCGGUaGCCGc----UCUGGCG--------CGUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 36873 0.71 0.130894
Target:  5'- gGCCA--GGCGcauaAGGCCGCGCcuGGCGCu -3'
miRNA:   3'- aCGGUagCCGC----UCUGGCGCG--UCGCGu -5'
30468 5' -61.2 NC_006548.1 + 13686 0.71 0.130894
Target:  5'- cGCCAUCGaGC-AGGCCGCGCGGg--- -3'
miRNA:   3'- aCGGUAGC-CGcUCUGGCGCGUCgcgu -5'
30468 5' -61.2 NC_006548.1 + 29114 0.71 0.130894
Target:  5'- gGCCggucucGUCaGCGAacuGGCCGCGCGGCaGCAa -3'
miRNA:   3'- aCGG------UAGcCGCU---CUGGCGCGUCG-CGU- -5'
30468 5' -61.2 NC_006548.1 + 14330 0.71 0.134197
Target:  5'- gGCCGaagcCGGCGAGcugcccaGCCGUGCAGCcguGCAu -3'
miRNA:   3'- aCGGUa---GCCGCUC-------UGGCGCGUCG---CGU- -5'
30468 5' -61.2 NC_006548.1 + 21305 0.71 0.136065
Target:  5'- cGUCggCGGCGGGaauuucggugcugauGCCGaucaGCAGCGCAg -3'
miRNA:   3'- aCGGuaGCCGCUC---------------UGGCg---CGUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 11678 0.71 0.146169
Target:  5'- cGCCGcaacccCGGCGccGCCGCGCGccGCGCAu -3'
miRNA:   3'- aCGGUa-----GCCGCucUGGCGCGU--CGCGU- -5'
30468 5' -61.2 NC_006548.1 + 27886 0.71 0.146169
Target:  5'- aUGCCAUugguuuccUGGCGGGugagGUGCAGCGCAg -3'
miRNA:   3'- -ACGGUA--------GCCGCUCugg-CGCGUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 5999 0.7 0.150234
Target:  5'- aGCCGUCaGGCuGAGACUccgGCGCAGaaggccCGCAa -3'
miRNA:   3'- aCGGUAG-CCG-CUCUGG---CGCGUC------GCGU- -5'
30468 5' -61.2 NC_006548.1 + 20897 0.7 0.158674
Target:  5'- aGCCggCGGcCGAGguGCUGCGCAGCuuGCu -3'
miRNA:   3'- aCGGuaGCC-GCUC--UGGCGCGUCG--CGu -5'
30468 5' -61.2 NC_006548.1 + 4510 0.7 0.162609
Target:  5'- cUGCCAUCGGCaacauGAuGAUCGCggcgaugaaucugGCGGUGCAu -3'
miRNA:   3'- -ACGGUAGCCG-----CU-CUGGCG-------------CGUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 28259 0.7 0.172137
Target:  5'- cUGCCAUCGGUuaugcggccaaaGGGGCUGCG-GGCGUc -3'
miRNA:   3'- -ACGGUAGCCG------------CUCUGGCGCgUCGCGu -5'
30468 5' -61.2 NC_006548.1 + 2247 0.69 0.191668
Target:  5'- aGCCGgucagcucCGGCGccGCCGCGCAGC-CGa -3'
miRNA:   3'- aCGGUa-------GCCGCucUGGCGCGUCGcGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.