miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30468 5' -61.2 NC_006548.1 + 1199 0.68 0.23053
Target:  5'- cGCCGcacaGGCGuugcuGGCCGCGCAGaCGg- -3'
miRNA:   3'- aCGGUag--CCGCu----CUGGCGCGUC-GCgu -5'
30468 5' -61.2 NC_006548.1 + 2155 0.68 0.224596
Target:  5'- gGCUAccUUGGUG-GACCGCuuGCAGCGUu -3'
miRNA:   3'- aCGGU--AGCCGCuCUGGCG--CGUCGCGu -5'
30468 5' -61.2 NC_006548.1 + 2247 0.69 0.191668
Target:  5'- aGCCGgucagcucCGGCGccGCCGCGCAGC-CGa -3'
miRNA:   3'- aCGGUa-------GCCGCucUGGCGCGUCGcGU- -5'
30468 5' -61.2 NC_006548.1 + 2716 0.68 0.236596
Target:  5'- cGUCAUCGaucuGC-AGGCgGCGCAGgGCAa -3'
miRNA:   3'- aCGGUAGC----CGcUCUGgCGCGUCgCGU- -5'
30468 5' -61.2 NC_006548.1 + 2730 0.75 0.066385
Target:  5'- gGCCAUCGGCGAGGCUGUccaggucgugaGCaccaaGGCGUAc -3'
miRNA:   3'- aCGGUAGCCGCUCUGGCG-----------CG-----UCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 4510 0.7 0.162609
Target:  5'- cUGCCAUCGGCaacauGAuGAUCGCggcgaugaaucugGCGGUGCAu -3'
miRNA:   3'- -ACGGUAGCCG-----CU-CUGGCG-------------CGUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 5999 0.7 0.150234
Target:  5'- aGCCGUCaGGCuGAGACUccgGCGCAGaaggccCGCAa -3'
miRNA:   3'- aCGGUAG-CCG-CUCUGG---CGCGUC------GCGU- -5'
30468 5' -61.2 NC_006548.1 + 6916 0.66 0.297328
Target:  5'- aUGCa---GGCGGuaGCUGUGCAGCGCGc -3'
miRNA:   3'- -ACGguagCCGCUc-UGGCGCGUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 6945 0.67 0.254944
Target:  5'- aGCUAUUGGCGccGGAgccggucaccgaaCUGCGCAGCcuGCAu -3'
miRNA:   3'- aCGGUAGCCGC--UCU-------------GGCGCGUCG--CGU- -5'
30468 5' -61.2 NC_006548.1 + 8522 0.66 0.297328
Target:  5'- cGCgAUCagaacGCGcAGGaCGCGCAGCGCGg -3'
miRNA:   3'- aCGgUAGc----CGC-UCUgGCGCGUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 9572 0.67 0.255597
Target:  5'- cGCCAggGGCGcacgcgaucAGugCaucgaGCGCGGCGCGc -3'
miRNA:   3'- aCGGUagCCGC---------UCugG-----CGCGUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 11678 0.71 0.146169
Target:  5'- cGCCGcaacccCGGCGccGCCGCGCGccGCGCAu -3'
miRNA:   3'- aCGGUa-----GCCGCucUGGCGCGU--CGCGU- -5'
30468 5' -61.2 NC_006548.1 + 12276 0.67 0.275832
Target:  5'- cGcCCGUCGGCGcacaGGGCCugGCGCAGUuuauGCc -3'
miRNA:   3'- aC-GGUAGCCGC----UCUGG--CGCGUCG----CGu -5'
30468 5' -61.2 NC_006548.1 + 12458 0.68 0.224596
Target:  5'- aGCCAaCGGuCGuagguGACCaGCGC-GCGCAg -3'
miRNA:   3'- aCGGUaGCC-GCu----CUGG-CGCGuCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 12933 0.66 0.297328
Target:  5'- gGCUcgCGcugagcGCGGuGCUGUGCGGCGCAg -3'
miRNA:   3'- aCGGuaGC------CGCUcUGGCGCGUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 13068 0.68 0.236595
Target:  5'- cGUCAcccUCGGCGcGGCCG-GUGGCGUAc -3'
miRNA:   3'- aCGGU---AGCCGCuCUGGCgCGUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 13299 0.66 0.311602
Target:  5'- cGCCcUCGGCGccGGuuugcccGCCGCaGgAGCGCGc -3'
miRNA:   3'- aCGGuAGCCGC--UC-------UGGCG-CgUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 13686 0.71 0.130894
Target:  5'- cGCCAUCGaGC-AGGCCGCGCGGg--- -3'
miRNA:   3'- aCGGUAGC-CGcUCUGGCGCGUCgcgu -5'
30468 5' -61.2 NC_006548.1 + 14330 0.71 0.134197
Target:  5'- gGCCGaagcCGGCGAGcugcccaGCCGUGCAGCcguGCAu -3'
miRNA:   3'- aCGGUa---GCCGCUC-------UGGCGCGUCG---CGU- -5'
30468 5' -61.2 NC_006548.1 + 16102 0.67 0.275832
Target:  5'- cGCCcagaacucGUCGGCauGGCCGUcaGCAGUGCGc -3'
miRNA:   3'- aCGG--------UAGCCGcuCUGGCG--CGUCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.