miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30468 5' -61.2 NC_006548.1 + 37832 0.75 0.070309
Target:  5'- aUGCCAggguUCGGUGAGGCCGacgacagaucaGCuGCGCAg -3'
miRNA:   3'- -ACGGU----AGCCGCUCUGGCg----------CGuCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 36873 0.71 0.130894
Target:  5'- gGCCA--GGCGcauaAGGCCGCGCcuGGCGCu -3'
miRNA:   3'- aCGGUagCCGC----UCUGGCGCG--UCGCGu -5'
30468 5' -61.2 NC_006548.1 + 36640 0.68 0.218792
Target:  5'- gUGCCGgccgCGGCGuuGAUCGCGUcGaCGCGg -3'
miRNA:   3'- -ACGGUa---GCCGCu-CUGGCGCGuC-GCGU- -5'
30468 5' -61.2 NC_006548.1 + 36589 0.67 0.268948
Target:  5'- cGCCG-CGGCcGGcACCGCGguGCucGCGc -3'
miRNA:   3'- aCGGUaGCCGcUC-UGGCGCguCG--CGU- -5'
30468 5' -61.2 NC_006548.1 + 33813 0.72 0.119416
Target:  5'- gGCCAUCGGCGAccGACCGCucgcgaucacugaaGCucaucGCGUAc -3'
miRNA:   3'- aCGGUAGCCGCU--CUGGCG--------------CGu----CGCGU- -5'
30468 5' -61.2 NC_006548.1 + 33390 0.72 0.113876
Target:  5'- gGCCAcgcagGGCGuacagcAGGCUGCGCAGCGCc -3'
miRNA:   3'- aCGGUag---CCGC------UCUGGCGCGUCGCGu -5'
30468 5' -61.2 NC_006548.1 + 32438 0.67 0.268268
Target:  5'- aUGCCAUCGGCGuccucgcGAUCgaucugcgacaggGUGCGGgGCGu -3'
miRNA:   3'- -ACGGUAGCCGCu------CUGG-------------CGCGUCgCGU- -5'
30468 5' -61.2 NC_006548.1 + 32415 0.67 0.262204
Target:  5'- aGCCGUCGccgcCGuuGCCGUucGCGGCGCu -3'
miRNA:   3'- aCGGUAGCc---GCucUGGCG--CGUCGCGu -5'
30468 5' -61.2 NC_006548.1 + 30822 0.74 0.076616
Target:  5'- aGCCAgcgccCGGCGGGAUCGCGgAGauaGCAg -3'
miRNA:   3'- aCGGUa----GCCGCUCUGGCGCgUCg--CGU- -5'
30468 5' -61.2 NC_006548.1 + 29412 1.08 0.000184
Target:  5'- gUGCCAUCGGCGAGACCGCGCAGCGCAu -3'
miRNA:   3'- -ACGGUAGCCGCUCUGGCGCGUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 29216 0.67 0.268948
Target:  5'- gGCCAaggcaacUGGCGAuccGGCCGCGaucgAGCGCGu -3'
miRNA:   3'- aCGGUa------GCCGCU---CUGGCGCg---UCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 29114 0.71 0.130894
Target:  5'- gGCCggucucGUCaGCGAacuGGCCGCGCGGCaGCAa -3'
miRNA:   3'- aCGG------UAGcCGCU---CUGGCGCGUCG-CGU- -5'
30468 5' -61.2 NC_006548.1 + 28616 0.68 0.23053
Target:  5'- cGCCAUcaggCGGCGaAGACaaaGcCGCuGCGCGc -3'
miRNA:   3'- aCGGUA----GCCGC-UCUGg--C-GCGuCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 28401 0.72 0.117105
Target:  5'- cGUCAUcacCGGCGGGACCGUuCAcGCGCGc -3'
miRNA:   3'- aCGGUA---GCCGCUCUGGCGcGU-CGCGU- -5'
30468 5' -61.2 NC_006548.1 + 28259 0.7 0.172137
Target:  5'- cUGCCAUCGGUuaugcggccaaaGGGGCUGCG-GGCGUc -3'
miRNA:   3'- -ACGGUAGCCG------------CUCUGGCGCgUCGCGu -5'
30468 5' -61.2 NC_006548.1 + 27886 0.71 0.146169
Target:  5'- aUGCCAUugguuuccUGGCGGGugagGUGCAGCGCAg -3'
miRNA:   3'- -ACGGUA--------GCCGCUCugg-CGCGUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 27222 0.66 0.327976
Target:  5'- gGCguUCauGGCGguGGACUGCGCuugAGCGCu -3'
miRNA:   3'- aCGguAG--CCGC--UCUGGCGCG---UCGCGu -5'
30468 5' -61.2 NC_006548.1 + 26999 0.66 0.327977
Target:  5'- aGCagCGUCGGCGAGuCCGCcgaucaGCAGacggccCGCAu -3'
miRNA:   3'- aCG--GUAGCCGCUCuGGCG------CGUC------GCGU- -5'
30468 5' -61.2 NC_006548.1 + 26480 0.67 0.262203
Target:  5'- aGCCGcaGGUGAG-CCGCGaCAGUGUu -3'
miRNA:   3'- aCGGUagCCGCUCuGGCGC-GUCGCGu -5'
30468 5' -61.2 NC_006548.1 + 23766 0.68 0.236595
Target:  5'- gUGCCAaguUCGGCGGcGCCGCcCAcGUGCu -3'
miRNA:   3'- -ACGGU---AGCCGCUcUGGCGcGU-CGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.