miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30468 5' -61.2 NC_006548.1 + 12276 0.67 0.275832
Target:  5'- cGcCCGUCGGCGcacaGGGCCugGCGCAGUuuauGCc -3'
miRNA:   3'- aC-GGUAGCCGC----UCUGG--CGCGUCG----CGu -5'
30468 5' -61.2 NC_006548.1 + 32415 0.67 0.262204
Target:  5'- aGCCGUCGccgcCGuuGCCGUucGCGGCGCu -3'
miRNA:   3'- aCGGUAGCc---GCucUGGCG--CGUCGCGu -5'
30468 5' -61.2 NC_006548.1 + 29114 0.71 0.130894
Target:  5'- gGCCggucucGUCaGCGAacuGGCCGCGCGGCaGCAa -3'
miRNA:   3'- aCGG------UAGcCGCU---CUGGCGCGUCG-CGU- -5'
30468 5' -61.2 NC_006548.1 + 9572 0.67 0.255597
Target:  5'- cGCCAggGGCGcacgcgaucAGugCaucgaGCGCGGCGCGc -3'
miRNA:   3'- aCGGUagCCGC---------UCugG-----CGCGUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 11678 0.71 0.146169
Target:  5'- cGCCGcaacccCGGCGccGCCGCGCGccGCGCAu -3'
miRNA:   3'- aCGGUa-----GCCGCucUGGCGCGU--CGCGU- -5'
30468 5' -61.2 NC_006548.1 + 20897 0.7 0.158674
Target:  5'- aGCCggCGGcCGAGguGCUGCGCAGCuuGCu -3'
miRNA:   3'- aCGGuaGCC-GCUC--UGGCGCGUCG--CGu -5'
30468 5' -61.2 NC_006548.1 + 28259 0.7 0.172137
Target:  5'- cUGCCAUCGGUuaugcggccaaaGGGGCUGCG-GGCGUc -3'
miRNA:   3'- -ACGGUAGCCG------------CUCUGGCGCgUCGCGu -5'
30468 5' -61.2 NC_006548.1 + 14330 0.71 0.134197
Target:  5'- gGCCGaagcCGGCGAGcugcccaGCCGUGCAGCcguGCAu -3'
miRNA:   3'- aCGGUa---GCCGCUC-------UGGCGCGUCG---CGU- -5'
30468 5' -61.2 NC_006548.1 + 29216 0.67 0.268948
Target:  5'- gGCCAaggcaacUGGCGAuccGGCCGCGaucgAGCGCGu -3'
miRNA:   3'- aCGGUa------GCCGCU---CUGGCGCg---UCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 36589 0.67 0.268948
Target:  5'- cGCCG-CGGCcGGcACCGCGguGCucGCGc -3'
miRNA:   3'- aCGGUaGCCGcUC-UGGCGCguCG--CGU- -5'
30468 5' -61.2 NC_006548.1 + 13686 0.71 0.130894
Target:  5'- cGCCAUCGaGC-AGGCCGCGCGGg--- -3'
miRNA:   3'- aCGGUAGC-CGcUCUGGCGCGUCgcgu -5'
30468 5' -61.2 NC_006548.1 + 20115 0.66 0.285705
Target:  5'- cGCCGaggCGGCGAaccGCaagauguacaagaaGCGCAGCGCu -3'
miRNA:   3'- aCGGUa--GCCGCUc--UGg-------------CGCGUCGCGu -5'
30468 5' -61.2 NC_006548.1 + 21994 0.66 0.290021
Target:  5'- cGCCcgaacAUCGGCGugcuGGGCCGuCGCAcCGCc -3'
miRNA:   3'- aCGG-----UAGCCGC----UCUGGC-GCGUcGCGu -5'
30468 5' -61.2 NC_006548.1 + 12933 0.66 0.297328
Target:  5'- gGCUcgCGcugagcGCGGuGCUGUGCGGCGCAg -3'
miRNA:   3'- aCGGuaGC------CGCUcUGGCGCGUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 8522 0.66 0.297328
Target:  5'- cGCgAUCagaacGCGcAGGaCGCGCAGCGCGg -3'
miRNA:   3'- aCGgUAGc----CGC-UCUgGCGCGUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 6916 0.66 0.297328
Target:  5'- aUGCa---GGCGGuaGCUGUGCAGCGCGc -3'
miRNA:   3'- -ACGguagCCGCUc-UGGCGCGUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 13299 0.66 0.311602
Target:  5'- cGCCcUCGGCGccGGuuugcccGCCGCaGgAGCGCGc -3'
miRNA:   3'- aCGGuAGCCGC--UC-------UGGCG-CgUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 19003 0.66 0.327977
Target:  5'- aGCCGgaacUGGCGAuuucccGGCCGC-CAGgGCAc -3'
miRNA:   3'- aCGGUa---GCCGCU------CUGGCGcGUCgCGU- -5'
30468 5' -61.2 NC_006548.1 + 26999 0.66 0.327977
Target:  5'- aGCagCGUCGGCGAGuCCGCcgaucaGCAGacggccCGCAu -3'
miRNA:   3'- aCG--GUAGCCGCUCuGGCG------CGUC------GCGU- -5'
30468 5' -61.2 NC_006548.1 + 22953 0.71 0.127313
Target:  5'- gGCCGcCGGCcucaaGGACCGCuucaucguGCAGCGCGa -3'
miRNA:   3'- aCGGUaGCCGc----UCUGGCG--------CGUCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.