miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30468 5' -61.2 NC_006548.1 + 2716 0.68 0.236596
Target:  5'- cGUCAUCGaucuGC-AGGCgGCGCAGgGCAa -3'
miRNA:   3'- aCGGUAGC----CGcUCUGgCGCGUCgCGU- -5'
30468 5' -61.2 NC_006548.1 + 23766 0.68 0.236595
Target:  5'- gUGCCAaguUCGGCGGcGCCGCcCAcGUGCu -3'
miRNA:   3'- -ACGGU---AGCCGCUcUGGCGcGU-CGCGu -5'
30468 5' -61.2 NC_006548.1 + 13068 0.68 0.236595
Target:  5'- cGUCAcccUCGGCGcGGCCG-GUGGCGUAc -3'
miRNA:   3'- aCGGU---AGCCGCuCUGGCgCGUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 28616 0.68 0.23053
Target:  5'- cGCCAUcaggCGGCGaAGACaaaGcCGCuGCGCGc -3'
miRNA:   3'- aCGGUA----GCCGC-UCUGg--C-GCGuCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 1199 0.68 0.23053
Target:  5'- cGCCGcacaGGCGuugcuGGCCGCGCAGaCGg- -3'
miRNA:   3'- aCGGUag--CCGCu----CUGGCGCGUC-GCgu -5'
30468 5' -61.2 NC_006548.1 + 12458 0.68 0.224596
Target:  5'- aGCCAaCGGuCGuagguGACCaGCGC-GCGCAg -3'
miRNA:   3'- aCGGUaGCC-GCu----CUGG-CGCGuCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 2155 0.68 0.224596
Target:  5'- gGCUAccUUGGUG-GACCGCuuGCAGCGUu -3'
miRNA:   3'- aCGGU--AGCCGCuCUGGCG--CGUCGCGu -5'
30468 5' -61.2 NC_006548.1 + 36640 0.68 0.218792
Target:  5'- gUGCCGgccgCGGCGuuGAUCGCGUcGaCGCGg -3'
miRNA:   3'- -ACGGUa---GCCGCu-CUGGCGCGuC-GCGU- -5'
30468 5' -61.2 NC_006548.1 + 18655 0.68 0.213117
Target:  5'- aGCCAU-GGCGAcaACCGcCGCAGgGCu -3'
miRNA:   3'- aCGGUAgCCGCUc-UGGC-GCGUCgCGu -5'
30468 5' -61.2 NC_006548.1 + 20581 0.68 0.207568
Target:  5'- aGCgG-CGGCaGAGGCUGCuGCGGCGUc -3'
miRNA:   3'- aCGgUaGCCG-CUCUGGCG-CGUCGCGu -5'
30468 5' -61.2 NC_006548.1 + 2247 0.69 0.191668
Target:  5'- aGCCGgucagcucCGGCGccGCCGCGCAGC-CGa -3'
miRNA:   3'- aCGGUa-------GCCGCucUGGCGCGUCGcGU- -5'
30468 5' -61.2 NC_006548.1 + 28259 0.7 0.172137
Target:  5'- cUGCCAUCGGUuaugcggccaaaGGGGCUGCG-GGCGUc -3'
miRNA:   3'- -ACGGUAGCCG------------CUCUGGCGCgUCGCGu -5'
30468 5' -61.2 NC_006548.1 + 4510 0.7 0.162609
Target:  5'- cUGCCAUCGGCaacauGAuGAUCGCggcgaugaaucugGCGGUGCAu -3'
miRNA:   3'- -ACGGUAGCCG-----CU-CUGGCG-------------CGUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 20897 0.7 0.158674
Target:  5'- aGCCggCGGcCGAGguGCUGCGCAGCuuGCu -3'
miRNA:   3'- aCGGuaGCC-GCUC--UGGCGCGUCG--CGu -5'
30468 5' -61.2 NC_006548.1 + 5999 0.7 0.150234
Target:  5'- aGCCGUCaGGCuGAGACUccgGCGCAGaaggccCGCAa -3'
miRNA:   3'- aCGGUAG-CCG-CUCUGG---CGCGUC------GCGU- -5'
30468 5' -61.2 NC_006548.1 + 11678 0.71 0.146169
Target:  5'- cGCCGcaacccCGGCGccGCCGCGCGccGCGCAu -3'
miRNA:   3'- aCGGUa-----GCCGCucUGGCGCGU--CGCGU- -5'
30468 5' -61.2 NC_006548.1 + 27886 0.71 0.146169
Target:  5'- aUGCCAUugguuuccUGGCGGGugagGUGCAGCGCAg -3'
miRNA:   3'- -ACGGUA--------GCCGCUCugg-CGCGUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 21305 0.71 0.136065
Target:  5'- cGUCggCGGCGGGaauuucggugcugauGCCGaucaGCAGCGCAg -3'
miRNA:   3'- aCGGuaGCCGCUC---------------UGGCg---CGUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 14330 0.71 0.134197
Target:  5'- gGCCGaagcCGGCGAGcugcccaGCCGUGCAGCcguGCAu -3'
miRNA:   3'- aCGGUa---GCCGCUC-------UGGCGCGUCG---CGU- -5'
30468 5' -61.2 NC_006548.1 + 13686 0.71 0.130894
Target:  5'- cGCCAUCGaGC-AGGCCGCGCGGg--- -3'
miRNA:   3'- aCGGUAGC-CGcUCUGGCGCGUCgcgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.