miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30468 5' -61.2 NC_006548.1 + 18655 0.68 0.213117
Target:  5'- aGCCAU-GGCGAcaACCGcCGCAGgGCu -3'
miRNA:   3'- aCGGUAgCCGCUc-UGGC-GCGUCgCGu -5'
30468 5' -61.2 NC_006548.1 + 19003 0.66 0.327977
Target:  5'- aGCCGgaacUGGCGAuuucccGGCCGC-CAGgGCAc -3'
miRNA:   3'- aCGGUa---GCCGCU------CUGGCGcGUCgCGU- -5'
30468 5' -61.2 NC_006548.1 + 20115 0.66 0.285705
Target:  5'- cGCCGaggCGGCGAaccGCaagauguacaagaaGCGCAGCGCu -3'
miRNA:   3'- aCGGUa--GCCGCUc--UGg-------------CGCGUCGCGu -5'
30468 5' -61.2 NC_006548.1 + 20581 0.68 0.207568
Target:  5'- aGCgG-CGGCaGAGGCUGCuGCGGCGUc -3'
miRNA:   3'- aCGgUaGCCG-CUCUGGCG-CGUCGCGu -5'
30468 5' -61.2 NC_006548.1 + 20897 0.7 0.158674
Target:  5'- aGCCggCGGcCGAGguGCUGCGCAGCuuGCu -3'
miRNA:   3'- aCGGuaGCC-GCUC--UGGCGCGUCG--CGu -5'
30468 5' -61.2 NC_006548.1 + 21305 0.71 0.136065
Target:  5'- cGUCggCGGCGGGaauuucggugcugauGCCGaucaGCAGCGCAg -3'
miRNA:   3'- aCGGuaGCCGCUC---------------UGGCg---CGUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 21402 0.66 0.3201
Target:  5'- cGCCccUgGGCGucGGCCGU-CAGCGCAu -3'
miRNA:   3'- aCGGu-AgCCGCu-CUGGCGcGUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 21994 0.66 0.290021
Target:  5'- cGCCcgaacAUCGGCGugcuGGGCCGuCGCAcCGCc -3'
miRNA:   3'- aCGG-----UAGCCGC----UCUGGC-GCGUcGCGu -5'
30468 5' -61.2 NC_006548.1 + 22015 0.67 0.275832
Target:  5'- aGCgCAUCGGUGAucACCG-GCAGCGgGu -3'
miRNA:   3'- aCG-GUAGCCGCUc-UGGCgCGUCGCgU- -5'
30468 5' -61.2 NC_006548.1 + 22953 0.71 0.127313
Target:  5'- gGCCGcCGGCcucaaGGACCGCuucaucguGCAGCGCGa -3'
miRNA:   3'- aCGGUaGCCGc----UCUGGCG--------CGUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 23766 0.68 0.236595
Target:  5'- gUGCCAaguUCGGCGGcGCCGCcCAcGUGCu -3'
miRNA:   3'- -ACGGU---AGCCGCUcUGGCGcGU-CGCGu -5'
30468 5' -61.2 NC_006548.1 + 26480 0.67 0.262203
Target:  5'- aGCCGcaGGUGAG-CCGCGaCAGUGUu -3'
miRNA:   3'- aCGGUagCCGCUCuGGCGC-GUCGCGu -5'
30468 5' -61.2 NC_006548.1 + 26999 0.66 0.327977
Target:  5'- aGCagCGUCGGCGAGuCCGCcgaucaGCAGacggccCGCAu -3'
miRNA:   3'- aCG--GUAGCCGCUCuGGCG------CGUC------GCGU- -5'
30468 5' -61.2 NC_006548.1 + 27222 0.66 0.327976
Target:  5'- gGCguUCauGGCGguGGACUGCGCuugAGCGCu -3'
miRNA:   3'- aCGguAG--CCGC--UCUGGCGCG---UCGCGu -5'
30468 5' -61.2 NC_006548.1 + 27886 0.71 0.146169
Target:  5'- aUGCCAUugguuuccUGGCGGGugagGUGCAGCGCAg -3'
miRNA:   3'- -ACGGUA--------GCCGCUCugg-CGCGUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 28259 0.7 0.172137
Target:  5'- cUGCCAUCGGUuaugcggccaaaGGGGCUGCG-GGCGUc -3'
miRNA:   3'- -ACGGUAGCCG------------CUCUGGCGCgUCGCGu -5'
30468 5' -61.2 NC_006548.1 + 28401 0.72 0.117105
Target:  5'- cGUCAUcacCGGCGGGACCGUuCAcGCGCGc -3'
miRNA:   3'- aCGGUA---GCCGCUCUGGCGcGU-CGCGU- -5'
30468 5' -61.2 NC_006548.1 + 28616 0.68 0.23053
Target:  5'- cGCCAUcaggCGGCGaAGACaaaGcCGCuGCGCGc -3'
miRNA:   3'- aCGGUA----GCCGC-UCUGg--C-GCGuCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 29114 0.71 0.130894
Target:  5'- gGCCggucucGUCaGCGAacuGGCCGCGCGGCaGCAa -3'
miRNA:   3'- aCGG------UAGcCGCU---CUGGCGCGUCG-CGU- -5'
30468 5' -61.2 NC_006548.1 + 29216 0.67 0.268948
Target:  5'- gGCCAaggcaacUGGCGAuccGGCCGCGaucgAGCGCGu -3'
miRNA:   3'- aCGGUa------GCCGCU---CUGGCGCg---UCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.