Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30469 | 5' | -59.4 | NC_006548.1 | + | 29393 | 0.66 | 0.394964 |
Target: 5'- cGCGGUau----CGUUCCUGCaGGCGGu -3' miRNA: 3'- aCGCCAccuuucGCGAGGACG-CCGCC- -5' |
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30469 | 5' | -59.4 | NC_006548.1 | + | 17060 | 0.66 | 0.394056 |
Target: 5'- gGCGGUcccGGAGcgcccggcuuccAGCaGCUCCgccugcaUGCcGGCGGg -3' miRNA: 3'- aCGCCA---CCUU------------UCG-CGAGG-------ACG-CCGCC- -5' |
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30469 | 5' | -59.4 | NC_006548.1 | + | 35370 | 0.66 | 0.385949 |
Target: 5'- aGcCGGUGGcgacGAGCGCUCaacggauggGaCGGUGGa -3' miRNA: 3'- aC-GCCACCu---UUCGCGAGga-------C-GCCGCC- -5' |
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30469 | 5' | -59.4 | NC_006548.1 | + | 21971 | 0.66 | 0.385949 |
Target: 5'- aUGCGcUGGAuAGCGUcaUCCUGCgcccgaacaucGGCGu -3' miRNA: 3'- -ACGCcACCUuUCGCG--AGGACG-----------CCGCc -5' |
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30469 | 5' | -59.4 | NC_006548.1 | + | 20629 | 0.67 | 0.342133 |
Target: 5'- cGCGGaagcaccgucggaUGGGGugacGGUGC-CCUGCGGCu- -3' miRNA: 3'- aCGCC-------------ACCUU----UCGCGaGGACGCCGcc -5' |
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30469 | 5' | -59.4 | NC_006548.1 | + | 5139 | 0.67 | 0.326753 |
Target: 5'- uUGCGGUGGugGGUGagUCCgGCGcCGGu -3' miRNA: 3'- -ACGCCACCuuUCGCg-AGGaCGCcGCC- -5' |
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30469 | 5' | -59.4 | NC_006548.1 | + | 32762 | 0.68 | 0.318866 |
Target: 5'- gGCGGgcGGAucuGGGCGCUgCCggUGUGGcCGGa -3' miRNA: 3'- aCGCCa-CCU---UUCGCGA-GG--ACGCC-GCC- -5' |
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30469 | 5' | -59.4 | NC_006548.1 | + | 16436 | 0.69 | 0.267673 |
Target: 5'- cGCGaGUGGAAGGUGgaagCCgGCGGUGa -3' miRNA: 3'- aCGC-CACCUUUCGCga--GGaCGCCGCc -5' |
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30469 | 5' | -59.4 | NC_006548.1 | + | 27213 | 0.7 | 0.223328 |
Target: 5'- gGCGGUGGAcuGCGCUUgaGCGcuaucGCGc -3' miRNA: 3'- aCGCCACCUuuCGCGAGgaCGC-----CGCc -5' |
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30469 | 5' | -59.4 | NC_006548.1 | + | 570 | 0.7 | 0.217528 |
Target: 5'- -cUGGUGGAAA-CGCUCCagGCGGCc- -3' miRNA: 3'- acGCCACCUUUcGCGAGGa-CGCCGcc -5' |
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30469 | 5' | -59.4 | NC_006548.1 | + | 20581 | 0.71 | 0.185386 |
Target: 5'- aGCGGcGGcAGAG-GCUgCUGCGGCGu -3' miRNA: 3'- aCGCCaCC-UUUCgCGAgGACGCCGCc -5' |
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30469 | 5' | -59.4 | NC_006548.1 | + | 24892 | 0.71 | 0.180454 |
Target: 5'- aUGCcGUccagcaGGAuguAGCGCUCCgGCGGUGGu -3' miRNA: 3'- -ACGcCA------CCUu--UCGCGAGGaCGCCGCC- -5' |
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30469 | 5' | -59.4 | NC_006548.1 | + | 22333 | 0.73 | 0.145037 |
Target: 5'- cGCGGUGGccAGCGCgUCCgUGuCGGUGa -3' miRNA: 3'- aCGCCACCuuUCGCG-AGG-AC-GCCGCc -5' |
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30469 | 5' | -59.4 | NC_006548.1 | + | 13389 | 0.84 | 0.020946 |
Target: 5'- cGcCGGcGGAAucggcgcGCGCUCCUGCGGCGGg -3' miRNA: 3'- aC-GCCaCCUUu------CGCGAGGACGCCGCC- -5' |
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30469 | 5' | -59.4 | NC_006548.1 | + | 29605 | 1.1 | 0.0002 |
Target: 5'- cUGCGGUGGAAAGCGCUCCUGCGGCGGa -3' miRNA: 3'- -ACGCCACCUUUCGCGAGGACGCCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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