miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30469 5' -59.4 NC_006548.1 + 29393 0.66 0.394964
Target:  5'- cGCGGUau----CGUUCCUGCaGGCGGu -3'
miRNA:   3'- aCGCCAccuuucGCGAGGACG-CCGCC- -5'
30469 5' -59.4 NC_006548.1 + 17060 0.66 0.394056
Target:  5'- gGCGGUcccGGAGcgcccggcuuccAGCaGCUCCgccugcaUGCcGGCGGg -3'
miRNA:   3'- aCGCCA---CCUU------------UCG-CGAGG-------ACG-CCGCC- -5'
30469 5' -59.4 NC_006548.1 + 35370 0.66 0.385949
Target:  5'- aGcCGGUGGcgacGAGCGCUCaacggauggGaCGGUGGa -3'
miRNA:   3'- aC-GCCACCu---UUCGCGAGga-------C-GCCGCC- -5'
30469 5' -59.4 NC_006548.1 + 21971 0.66 0.385949
Target:  5'- aUGCGcUGGAuAGCGUcaUCCUGCgcccgaacaucGGCGu -3'
miRNA:   3'- -ACGCcACCUuUCGCG--AGGACG-----------CCGCc -5'
30469 5' -59.4 NC_006548.1 + 20629 0.67 0.342133
Target:  5'- cGCGGaagcaccgucggaUGGGGugacGGUGC-CCUGCGGCu- -3'
miRNA:   3'- aCGCC-------------ACCUU----UCGCGaGGACGCCGcc -5'
30469 5' -59.4 NC_006548.1 + 5139 0.67 0.326753
Target:  5'- uUGCGGUGGugGGUGagUCCgGCGcCGGu -3'
miRNA:   3'- -ACGCCACCuuUCGCg-AGGaCGCcGCC- -5'
30469 5' -59.4 NC_006548.1 + 32762 0.68 0.318866
Target:  5'- gGCGGgcGGAucuGGGCGCUgCCggUGUGGcCGGa -3'
miRNA:   3'- aCGCCa-CCU---UUCGCGA-GG--ACGCC-GCC- -5'
30469 5' -59.4 NC_006548.1 + 16436 0.69 0.267673
Target:  5'- cGCGaGUGGAAGGUGgaagCCgGCGGUGa -3'
miRNA:   3'- aCGC-CACCUUUCGCga--GGaCGCCGCc -5'
30469 5' -59.4 NC_006548.1 + 27213 0.7 0.223328
Target:  5'- gGCGGUGGAcuGCGCUUgaGCGcuaucGCGc -3'
miRNA:   3'- aCGCCACCUuuCGCGAGgaCGC-----CGCc -5'
30469 5' -59.4 NC_006548.1 + 570 0.7 0.217528
Target:  5'- -cUGGUGGAAA-CGCUCCagGCGGCc- -3'
miRNA:   3'- acGCCACCUUUcGCGAGGa-CGCCGcc -5'
30469 5' -59.4 NC_006548.1 + 20581 0.71 0.185386
Target:  5'- aGCGGcGGcAGAG-GCUgCUGCGGCGu -3'
miRNA:   3'- aCGCCaCC-UUUCgCGAgGACGCCGCc -5'
30469 5' -59.4 NC_006548.1 + 24892 0.71 0.180454
Target:  5'- aUGCcGUccagcaGGAuguAGCGCUCCgGCGGUGGu -3'
miRNA:   3'- -ACGcCA------CCUu--UCGCGAGGaCGCCGCC- -5'
30469 5' -59.4 NC_006548.1 + 22333 0.73 0.145037
Target:  5'- cGCGGUGGccAGCGCgUCCgUGuCGGUGa -3'
miRNA:   3'- aCGCCACCuuUCGCG-AGG-AC-GCCGCc -5'
30469 5' -59.4 NC_006548.1 + 13389 0.84 0.020946
Target:  5'- cGcCGGcGGAAucggcgcGCGCUCCUGCGGCGGg -3'
miRNA:   3'- aC-GCCaCCUUu------CGCGAGGACGCCGCC- -5'
30469 5' -59.4 NC_006548.1 + 29605 1.1 0.0002
Target:  5'- cUGCGGUGGAAAGCGCUCCUGCGGCGGa -3'
miRNA:   3'- -ACGCCACCUUUCGCGAGGACGCCGCC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.