miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30470 3' -56.4 NC_006548.1 + 1066 0.66 0.494058
Target:  5'- cCAUGUcgacgacccagccGGCGCAGCUCAGCauCGCUg- -3'
miRNA:   3'- -GUACG-------------UCGCGUCGGGUUGguGCGAac -5'
30470 3' -56.4 NC_006548.1 + 1261 0.66 0.473927
Target:  5'- --cGCGGUGCGGCa-GGCUugGCUUu -3'
miRNA:   3'- guaCGUCGCGUCGggUUGGugCGAAc -5'
30470 3' -56.4 NC_006548.1 + 1921 0.67 0.463498
Target:  5'- gGUGCccgauccccuGGUGCAGCC--GCgCGCGCUUGc -3'
miRNA:   3'- gUACG----------UCGCGUCGGguUG-GUGCGAAC- -5'
30470 3' -56.4 NC_006548.1 + 2731 0.68 0.403622
Target:  5'- --gGCGGCGCAGggCAAgCACGCUg- -3'
miRNA:   3'- guaCGUCGCGUCggGUUgGUGCGAac -5'
30470 3' -56.4 NC_006548.1 + 5633 0.69 0.340281
Target:  5'- --cGCaAGC-CGGCCCGGCCugGCcUGc -3'
miRNA:   3'- guaCG-UCGcGUCGGGUUGGugCGaAC- -5'
30470 3' -56.4 NC_006548.1 + 6930 0.73 0.184295
Target:  5'- uGUGCAGCGCGcGgCUGAUCGCGCUg- -3'
miRNA:   3'- gUACGUCGCGU-CgGGUUGGUGCGAac -5'
30470 3' -56.4 NC_006548.1 + 7204 0.67 0.432957
Target:  5'- gAUGcCAGCGacaGGCCCAgcucuGCCGCgGCUg- -3'
miRNA:   3'- gUAC-GUCGCg--UCGGGU-----UGGUG-CGAac -5'
30470 3' -56.4 NC_006548.1 + 8082 0.68 0.366523
Target:  5'- cCAUGUagaAGCGC-GCCUcauuGACCACGCg-- -3'
miRNA:   3'- -GUACG---UCGCGuCGGG----UUGGUGCGaac -5'
30470 3' -56.4 NC_006548.1 + 12437 0.69 0.315426
Target:  5'- --aGCGcGCGCAguGCCCAGCCugGaUUGa -3'
miRNA:   3'- guaCGU-CGCGU--CGGGUUGGugCgAAC- -5'
30470 3' -56.4 NC_006548.1 + 12954 0.76 0.113242
Target:  5'- uGUGCGGCGCAGCCgugguGACCACgGCUc- -3'
miRNA:   3'- gUACGUCGCGUCGGg----UUGGUG-CGAac -5'
30470 3' -56.4 NC_006548.1 + 13078 0.66 0.473927
Target:  5'- --aGCAGCGCAGCgUcACCcucgGCGCg-- -3'
miRNA:   3'- guaCGUCGCGUCGgGuUGG----UGCGaac -5'
30470 3' -56.4 NC_006548.1 + 15243 0.71 0.229809
Target:  5'- gGUGCAGgGCGaacucGUCCAggaugcguccGCCGCGCUUGc -3'
miRNA:   3'- gUACGUCgCGU-----CGGGU----------UGGUGCGAAC- -5'
30470 3' -56.4 NC_006548.1 + 16576 0.68 0.375575
Target:  5'- -cUGguGaCGCGGuCCCAGCCcACGCg-- -3'
miRNA:   3'- guACguC-GCGUC-GGGUUGG-UGCGaac -5'
30470 3' -56.4 NC_006548.1 + 16981 0.66 0.505889
Target:  5'- gCAUGCAGgGCcGCCagUAGCUugGCcUUGu -3'
miRNA:   3'- -GUACGUCgCGuCGG--GUUGGugCG-AAC- -5'
30470 3' -56.4 NC_006548.1 + 19132 0.66 0.505889
Target:  5'- --gGCAGCGCAGCgcugggagauCCGAgCGgGCUUc -3'
miRNA:   3'- guaCGUCGCGUCG----------GGUUgGUgCGAAc -5'
30470 3' -56.4 NC_006548.1 + 20118 0.68 0.376488
Target:  5'- gCAUGCcgucGCGCaccuccagacccuuGGCCCAGCCAUaggccggcgcauugaGCUUGg -3'
miRNA:   3'- -GUACGu---CGCG--------------UCGGGUUGGUG---------------CGAAC- -5'
30470 3' -56.4 NC_006548.1 + 21935 0.67 0.461426
Target:  5'- --cGCGGCGUAGCUauuggggcugaaGACCA-GCUUGg -3'
miRNA:   3'- guaCGUCGCGUCGGg-----------UUGGUgCGAAC- -5'
30470 3' -56.4 NC_006548.1 + 22065 0.66 0.495128
Target:  5'- --cGguGCGaCGGCCCAG-CACGCc-- -3'
miRNA:   3'- guaCguCGC-GUCGGGUUgGUGCGaac -5'
30470 3' -56.4 NC_006548.1 + 23707 0.69 0.315426
Target:  5'- --gGCGGCGCcGCCgAACUugGCa-- -3'
miRNA:   3'- guaCGUCGCGuCGGgUUGGugCGaac -5'
30470 3' -56.4 NC_006548.1 + 23758 0.66 0.473927
Target:  5'- uUcgGCGGCGCcGCCCA--CGUGCUUGa -3'
miRNA:   3'- -GuaCGUCGCGuCGGGUugGUGCGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.