miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30471 3' -56.9 NC_006548.1 + 503 0.66 0.528606
Target:  5'- uAUCUGCGGCCGccugGaGCGuuuccACCAGg -3'
miRNA:   3'- -UGGACGCCGGCaa--C-CGCuucu-UGGUC- -5'
30471 3' -56.9 NC_006548.1 + 16873 0.66 0.517824
Target:  5'- aACUUGauGCCGUUGcGCuuGAAGAacACCGGc -3'
miRNA:   3'- -UGGACgcCGGCAAC-CG--CUUCU--UGGUC- -5'
30471 3' -56.9 NC_006548.1 + 12397 0.66 0.517824
Target:  5'- uGCCgaggGCGGCCGgauacaggccGGCGAuccacucagcGGuACCGGg -3'
miRNA:   3'- -UGGa---CGCCGGCaa--------CCGCU----------UCuUGGUC- -5'
30471 3' -56.9 NC_006548.1 + 12332 0.66 0.50713
Target:  5'- cCCUGUGcGCCGacgGGCGAgcGGGcaucagcacGCCAGc -3'
miRNA:   3'- uGGACGC-CGGCaa-CCGCU--UCU---------UGGUC- -5'
30471 3' -56.9 NC_006548.1 + 22256 0.66 0.50713
Target:  5'- cGCgUGCGGCCcccaGGCGc-GAAUCAGg -3'
miRNA:   3'- -UGgACGCCGGcaa-CCGCuuCUUGGUC- -5'
30471 3' -56.9 NC_006548.1 + 7520 0.66 0.475643
Target:  5'- gGCCUGCucGGCCaacUUGGCGAAGccuucACgCAGu -3'
miRNA:   3'- -UGGACG--CCGGc--AACCGCUUCu----UG-GUC- -5'
30471 3' -56.9 NC_006548.1 + 13947 0.67 0.465364
Target:  5'- cCCUGaacaaugcuCGGCCGgugGGCccuacGAGGGGCCGGu -3'
miRNA:   3'- uGGAC---------GCCGGCaa-CCG-----CUUCUUGGUC- -5'
30471 3' -56.9 NC_006548.1 + 32566 0.67 0.435244
Target:  5'- cACCgcGUGGCCGUUuGCGccGGACUGGg -3'
miRNA:   3'- -UGGa-CGCCGGCAAcCGCuuCUUGGUC- -5'
30471 3' -56.9 NC_006548.1 + 15851 0.68 0.415801
Target:  5'- uACCca-GGCCGgUGGCGucGAugCAGa -3'
miRNA:   3'- -UGGacgCCGGCaACCGCuuCUugGUC- -5'
30471 3' -56.9 NC_006548.1 + 15164 0.68 0.415801
Target:  5'- -aCgGCGGCCaUUGGCGAAcu-CCAGg -3'
miRNA:   3'- ugGaCGCCGGcAACCGCUUcuuGGUC- -5'
30471 3' -56.9 NC_006548.1 + 19264 0.71 0.253131
Target:  5'- uACCUGCGGCgcaa-GCGAAaGAACCGGg -3'
miRNA:   3'- -UGGACGCCGgcaacCGCUU-CUUGGUC- -5'
30471 3' -56.9 NC_006548.1 + 18782 0.75 0.133498
Target:  5'- gGCCUGCGGCUG--GGCGAGGAucugcggcagggucGCUAGc -3'
miRNA:   3'- -UGGACGCCGGCaaCCGCUUCU--------------UGGUC- -5'
30471 3' -56.9 NC_006548.1 + 30603 1.08 0.000509
Target:  5'- aACCUGCGGCCGUUGGCGAAGAACCAGu -3'
miRNA:   3'- -UGGACGCCGGCAACCGCUUCUUGGUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.