miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30471 5' -54.4 NC_006548.1 + 19392 0.66 0.607087
Target:  5'- cGCUGccgUCCAgcugguaGCgCAGCAgGUUGCGCa -3'
miRNA:   3'- cCGACca-AGGUa------CG-GUCGU-CAACGUG- -5'
30471 5' -54.4 NC_006548.1 + 36246 0.66 0.607087
Target:  5'- cGGCUGGacugcggacgUCCcggcUGCCGGCAGUccgaaCACg -3'
miRNA:   3'- -CCGACCa---------AGGu---ACGGUCGUCAac---GUG- -5'
30471 5' -54.4 NC_006548.1 + 2811 0.66 0.607087
Target:  5'- aGCUGGgaacaUCCGUaCCGGCAGcgUGCu- -3'
miRNA:   3'- cCGACCa----AGGUAcGGUCGUCa-ACGug -5'
30471 5' -54.4 NC_006548.1 + 6292 0.67 0.572639
Target:  5'- -cCUGGUgcgCCuAUGCCGGCug-UGUACg -3'
miRNA:   3'- ccGACCAa--GG-UACGGUCGucaACGUG- -5'
30471 5' -54.4 NC_006548.1 + 8747 0.67 0.561252
Target:  5'- uGGCU--UUCCAUGCCGGCAGc----- -3'
miRNA:   3'- -CCGAccAAGGUACGGUCGUCaacgug -5'
30471 5' -54.4 NC_006548.1 + 13678 0.68 0.483751
Target:  5'- cGGCUGGacgCCAU-CgAGCAGgccGCGCg -3'
miRNA:   3'- -CCGACCaa-GGUAcGgUCGUCaa-CGUG- -5'
30471 5' -54.4 NC_006548.1 + 5764 0.68 0.483751
Target:  5'- aGCUGuGUUCCGUGCCGcGUcGcgGCAUa -3'
miRNA:   3'- cCGAC-CAAGGUACGGU-CGuCaaCGUG- -5'
30471 5' -54.4 NC_006548.1 + 14394 0.68 0.462536
Target:  5'- cGGCUGGcggcaaUUCGUGCCAGCAccgagGCGg -3'
miRNA:   3'- -CCGACCa-----AGGUACGGUCGUcaa--CGUg -5'
30471 5' -54.4 NC_006548.1 + 20772 0.7 0.392438
Target:  5'- uGCUGGgccaccugugcUUCgCGggugGCCAGCAGUUGCucGCg -3'
miRNA:   3'- cCGACC-----------AAG-GUa---CGGUCGUCAACG--UG- -5'
30471 5' -54.4 NC_006548.1 + 32238 0.73 0.25329
Target:  5'- cGGCUGGUgugCCGcauagcUGCCAGCcaaGGUcgagGCGCu -3'
miRNA:   3'- -CCGACCAa--GGU------ACGGUCG---UCAa---CGUG- -5'
30471 5' -54.4 NC_006548.1 + 29645 0.77 0.124664
Target:  5'- uGCUGGUgCCGcUGCCAGCGGUgccgGUGCg -3'
miRNA:   3'- cCGACCAaGGU-ACGGUCGUCAa---CGUG- -5'
30471 5' -54.4 NC_006548.1 + 30568 1.11 0.00041
Target:  5'- cGGCUGGUUCCAUGCCAGCAGUUGCACc -3'
miRNA:   3'- -CCGACCAAGGUACGGUCGUCAACGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.