Results 21 - 26 of 26 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 30472 | 3' | -51 | NC_006548.1 | + | 18715 | 0.67 | 0.80296 |
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Target: 5'- cCUGCGGC-GGUUGuCGccAUGGCUuUCGCa -3' miRNA: 3'- -GGCGUCGaCUAACuGU--UGCCGA-AGUG- -5' |
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| 30472 | 3' | -51 | NC_006548.1 | + | 36440 | 0.66 | 0.813025 |
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Target: 5'- aCGCGGCUGA---GCAGCGcGUagUUCAUc -3' miRNA: 3'- gGCGUCGACUaacUGUUGC-CG--AAGUG- -5' |
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| 30472 | 3' | -51 | NC_006548.1 | + | 26986 | 0.66 | 0.822877 |
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Target: 5'- cCCcCAaCUGAUcGAgGGCGGCUUUACc -3' miRNA: 3'- -GGcGUcGACUAaCUgUUGCCGAAGUG- -5' |
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| 30472 | 3' | -51 | NC_006548.1 | + | 29588 | 0.66 | 0.841889 |
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Target: 5'- cCUGCGGCgGAggUGACAGCaGCagcucccgUCACc -3' miRNA: 3'- -GGCGUCGaCUa-ACUGUUGcCGa-------AGUG- -5' |
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| 30472 | 3' | -51 | NC_006548.1 | + | 12188 | 0.66 | 0.84189 |
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Target: 5'- gCGCAuGCUGAgugggGACuguCGGCgccgaUCGCu -3' miRNA: 3'- gGCGU-CGACUaa---CUGuu-GCCGa----AGUG- -5' |
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| 30472 | 3' | -51 | NC_006548.1 | + | 17560 | 0.66 | 0.842814 |
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Target: 5'- gCGCAGUUGGgucguccaguugccGACGACaGGCUgcaUCGCu -3' miRNA: 3'- gGCGUCGACUaa------------CUGUUG-CCGA---AGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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