Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30472 | 5' | -59.3 | NC_006548.1 | + | 1963 | 0.67 | 0.323196 |
Target: 5'- gGCAcca-GGCCGUGGCUCGGCuuacucaGGGGGu -3' miRNA: 3'- -CGUauugCCGGCGUCGGGUCG-------CCCUC- -5' |
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30472 | 5' | -59.3 | NC_006548.1 | + | 3841 | 0.69 | 0.251735 |
Target: 5'- uGCAggAGCGGCgCGCucAGCaauCAGCaGGGAGg -3' miRNA: 3'- -CGUa-UUGCCG-GCG--UCGg--GUCG-CCCUC- -5' |
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30472 | 5' | -59.3 | NC_006548.1 | + | 5536 | 0.67 | 0.32399 |
Target: 5'- gGCucgAGCGGUCGaccugAGCCCGGCGGc-- -3' miRNA: 3'- -CGua-UUGCCGGCg----UCGGGUCGCCcuc -5' |
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30472 | 5' | -59.3 | NC_006548.1 | + | 7423 | 0.66 | 0.409668 |
Target: 5'- gGCcgAuAUGGCCGCccuggauGCCCAGUucgcggacggaguGGGAGc -3' miRNA: 3'- -CGuaU-UGCCGGCGu------CGGGUCG-------------CCCUC- -5' |
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30472 | 5' | -59.3 | NC_006548.1 | + | 7678 | 0.66 | 0.410602 |
Target: 5'- cCAUGACGGCCGacCAGCgC-GCGGcaGAGc -3' miRNA: 3'- cGUAUUGCCGGC--GUCGgGuCGCC--CUC- -5' |
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30472 | 5' | -59.3 | NC_006548.1 | + | 12642 | 0.66 | 0.380467 |
Target: 5'- cGCGgaaguUGGCGGCCGagcGCCCGGCGuugaagcgcucgacGGAa -3' miRNA: 3'- -CGU-----AUUGCCGGCgu-CGGGUCGC--------------CCUc -5' |
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30472 | 5' | -59.3 | NC_006548.1 | + | 17950 | 0.68 | 0.300802 |
Target: 5'- aGCcgGAgGGUgGcCAGCCUGGCGGGc- -3' miRNA: 3'- -CGuaUUgCCGgC-GUCGGGUCGCCCuc -5' |
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30472 | 5' | -59.3 | NC_006548.1 | + | 18790 | 0.74 | 0.108044 |
Target: 5'- aGCAgcACGGCCuGCGGCUgGGCGaGGAu -3' miRNA: 3'- -CGUauUGCCGG-CGUCGGgUCGC-CCUc -5' |
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30472 | 5' | -59.3 | NC_006548.1 | + | 21338 | 0.74 | 0.120963 |
Target: 5'- uGCGcUGACGGCCGaC-GCCCAGgGGcGAGc -3' miRNA: 3'- -CGU-AUUGCCGGC-GuCGGGUCgCC-CUC- -5' |
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30472 | 5' | -59.3 | NC_006548.1 | + | 25933 | 0.69 | 0.265044 |
Target: 5'- uCGUAACGGCCcgcGCGGgCCAGCaGGcGg -3' miRNA: 3'- cGUAUUGCCGG---CGUCgGGUCGcCCuC- -5' |
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30472 | 5' | -59.3 | NC_006548.1 | + | 27104 | 0.67 | 0.356934 |
Target: 5'- uGCAgcgaGGCCGCcaccauGGCCCugauGCGGGc- -3' miRNA: 3'- -CGUauugCCGGCG------UCGGGu---CGCCCuc -5' |
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30472 | 5' | -59.3 | NC_006548.1 | + | 27785 | 0.66 | 0.383145 |
Target: 5'- ----cGCGGCCGCca-CCAgGCGGGAa -3' miRNA: 3'- cguauUGCCGGCGucgGGU-CGCCCUc -5' |
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30472 | 5' | -59.3 | NC_006548.1 | + | 28028 | 0.7 | 0.203938 |
Target: 5'- cGCGguuCGG-CGCGGCCCuGCaGGAGg -3' miRNA: 3'- -CGUauuGCCgGCGUCGGGuCGcCCUC- -5' |
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30472 | 5' | -59.3 | NC_006548.1 | + | 29822 | 0.73 | 0.13158 |
Target: 5'- gGCG--GCGGCCGCAaCCCAGcCGGGc- -3' miRNA: 3'- -CGUauUGCCGGCGUcGGGUC-GCCCuc -5' |
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30472 | 5' | -59.3 | NC_006548.1 | + | 30832 | 0.66 | 0.36553 |
Target: 5'- -aGUGAaacCGaGCCaGC-GCCCGGCGGGAu -3' miRNA: 3'- cgUAUU---GC-CGG-CGuCGGGUCGCCCUc -5' |
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30472 | 5' | -59.3 | NC_006548.1 | + | 30907 | 1.11 | 0.000164 |
Target: 5'- cGCAUAACGGCCGCAGCCCAGCGGGAGg -3' miRNA: 3'- -CGUAUUGCCGGCGUCGGGUCGCCCUC- -5' |
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30472 | 5' | -59.3 | NC_006548.1 | + | 36409 | 0.82 | 0.026697 |
Target: 5'- gGCcgGACGGCCGCAuGCCCAGCGcagcGAGg -3' miRNA: 3'- -CGuaUUGCCGGCGU-CGGGUCGCc---CUC- -5' |
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30472 | 5' | -59.3 | NC_006548.1 | + | 36866 | 0.66 | 0.392161 |
Target: 5'- cGCAUAA-GGCCGC-GCCUGGCGcuGGu- -3' miRNA: 3'- -CGUAUUgCCGGCGuCGGGUCGC--CCuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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