miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30477 3' -55.4 NC_006548.1 + 30582 0.66 0.62839
Target:  5'- gGUCAGcacgauuuacGAGUCgGCCGGCGCGGgcuUCAu -3'
miRNA:   3'- gCGGUCaa--------CUUAG-CGGCUGCGCC---AGU- -5'
30477 3' -55.4 NC_006548.1 + 37527 0.66 0.617161
Target:  5'- aCGCCAGccca---GCCGugGCGG-CAu -3'
miRNA:   3'- -GCGGUCaacuuagCGGCugCGCCaGU- -5'
30477 3' -55.4 NC_006548.1 + 17142 0.66 0.617161
Target:  5'- uCGCCuugaccuggUGAAg-GCCGACGCGGaUCu -3'
miRNA:   3'- -GCGGuca------ACUUagCGGCUGCGCC-AGu -5'
30477 3' -55.4 NC_006548.1 + 20105 0.67 0.572481
Target:  5'- uGCCGGagu--UCGCCGAgGCGG-CGa -3'
miRNA:   3'- gCGGUCaacuuAGCGGCUgCGCCaGU- -5'
30477 3' -55.4 NC_006548.1 + 22756 0.67 0.526443
Target:  5'- gGCCAGUcccgaagcggcgGAGUCGCCuuUGCGGaUCGc -3'
miRNA:   3'- gCGGUCAa-----------CUUAGCGGcuGCGCC-AGU- -5'
30477 3' -55.4 NC_006548.1 + 36779 0.67 0.525362
Target:  5'- gCGCCGGUcgacucgcugcgaaUGAAccagCGCCaGGCGCGGcCu -3'
miRNA:   3'- -GCGGUCA--------------ACUUa---GCGG-CUGCGCCaGu -5'
30477 3' -55.4 NC_006548.1 + 23617 0.68 0.496531
Target:  5'- gCGCCAGUaccugcgGAAccccacCGCCuGGCGgGGUCAg -3'
miRNA:   3'- -GCGGUCAa------CUUa-----GCGG-CUGCgCCAGU- -5'
30477 3' -55.4 NC_006548.1 + 12814 0.68 0.465364
Target:  5'- uCGCCAGUgccg-CGCgagCGGCGCGGUa- -3'
miRNA:   3'- -GCGGUCAacuuaGCG---GCUGCGCCAgu -5'
30477 3' -55.4 NC_006548.1 + 8094 0.68 0.465364
Target:  5'- gCGCCucaUUGAccaCGCgGAUGCGGUCGu -3'
miRNA:   3'- -GCGGuc-AACUua-GCGgCUGCGCCAGU- -5'
30477 3' -55.4 NC_006548.1 + 36952 0.7 0.406281
Target:  5'- aGCCGGUUGcggugCGCCcacGACaCGGUCAg -3'
miRNA:   3'- gCGGUCAACuua--GCGG---CUGcGCCAGU- -5'
30477 3' -55.4 NC_006548.1 + 33440 0.7 0.3969
Target:  5'- aGCUGGUUGG---GCUGGCGCGGUUc -3'
miRNA:   3'- gCGGUCAACUuagCGGCUGCGCCAGu -5'
30477 3' -55.4 NC_006548.1 + 1127 0.7 0.387659
Target:  5'- gCGCCGGcUGggUCGUCGACaUGG-CAu -3'
miRNA:   3'- -GCGGUCaACuuAGCGGCUGcGCCaGU- -5'
30477 3' -55.4 NC_006548.1 + 32326 0.7 0.369607
Target:  5'- gGCCAG--GAAUCaGCCaGAUGCGGUUg -3'
miRNA:   3'- gCGGUCaaCUUAG-CGG-CUGCGCCAGu -5'
30477 3' -55.4 NC_006548.1 + 36635 0.7 0.360799
Target:  5'- gGCCGcggcGUUGAucgCGUCGACGCGGa-- -3'
miRNA:   3'- gCGGU----CAACUua-GCGGCUGCGCCagu -5'
30477 3' -55.4 NC_006548.1 + 7097 0.71 0.335263
Target:  5'- gCGCCuGUauuccGUUGCUGAUGCGGUCGa -3'
miRNA:   3'- -GCGGuCAacu--UAGCGGCUGCGCCAGU- -5'
30477 3' -55.4 NC_006548.1 + 1464 0.71 0.32705
Target:  5'- gCGCCgAGgcGGAUCGCCGGCaGUGGa-- -3'
miRNA:   3'- -GCGG-UCaaCUUAGCGGCUG-CGCCagu -5'
30477 3' -55.4 NC_006548.1 + 8294 0.72 0.288233
Target:  5'- cCGgCGGUUGAuuUCGuuGAUGCGGUUc -3'
miRNA:   3'- -GCgGUCAACUu-AGCggCUGCGCCAGu -5'
30477 3' -55.4 NC_006548.1 + 18456 0.72 0.273752
Target:  5'- aGCCGGUUcGggUgGCagCGGCGUGGUCu -3'
miRNA:   3'- gCGGUCAA-CuuAgCG--GCUGCGCCAGu -5'
30477 3' -55.4 NC_006548.1 + 870 0.73 0.253131
Target:  5'- aGCCAGUUGcc-CGCCGAgGUccaGGUCAu -3'
miRNA:   3'- gCGGUCAACuuaGCGGCUgCG---CCAGU- -5'
30477 3' -55.4 NC_006548.1 + 33003 1.09 0.00067
Target:  5'- gCGCCAGUUGAAUCGCCGACGCGGUCAg -3'
miRNA:   3'- -GCGGUCAACUUAGCGGCUGCGCCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.