miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30478 3' -55.6 NC_006548.1 + 18226 0.66 0.570001
Target:  5'- gGCA-UCGCUGGgcaaggACGGCccGGACGAGc -3'
miRNA:   3'- -CGUcGGCGACCa-----UGCUGucCCUGUUC- -5'
30478 3' -55.6 NC_006548.1 + 29578 0.66 0.592367
Target:  5'- -uGGUgGCUGGUGCGGCugccauucAGGGAg--- -3'
miRNA:   3'- cgUCGgCGACCAUGCUG--------UCCCUguuc -5'
30478 3' -55.6 NC_006548.1 + 30690 0.66 0.608112
Target:  5'- uGCAacCCGCUGGUcCGACGuuagcgaccggcaccGGGGCAu- -3'
miRNA:   3'- -CGUc-GGCGACCAuGCUGU---------------CCCUGUuc -5'
30478 3' -55.6 NC_006548.1 + 18784 0.66 0.614875
Target:  5'- aCGGCCugcgGCUGGgcgaggaucUGCGGCAGGGuCGc- -3'
miRNA:   3'- cGUCGG----CGACC---------AUGCUGUCCCuGUuc -5'
30478 3' -55.6 NC_006548.1 + 29434 0.68 0.442337
Target:  5'- cGCGGCCucCUGcaGCGACAGGGugccaucgGCGAGa -3'
miRNA:   3'- -CGUCGGc-GACcaUGCUGUCCC--------UGUUC- -5'
30478 3' -55.6 NC_006548.1 + 30702 0.68 0.483285
Target:  5'- aCAGCCaGUggauacgGGaacUGCGACGGcGGACAGGg -3'
miRNA:   3'- cGUCGG-CGa------CC---AUGCUGUC-CCUGUUC- -5'
30478 3' -55.6 NC_006548.1 + 12977 0.69 0.431422
Target:  5'- cGCgAGCCagaacguGCUGGUGCG-CAGGaGGCuAAGg -3'
miRNA:   3'- -CG-UCGG-------CGACCAUGCuGUCC-CUG-UUC- -5'
30478 3' -55.6 NC_006548.1 + 29648 0.72 0.264049
Target:  5'- uGguGCCGCUgccagcggugccGGUGCGGCAGGuGCGGc -3'
miRNA:   3'- -CguCGGCGA------------CCAUGCUGUCCcUGUUc -5'
30478 3' -55.6 NC_006548.1 + 4497 0.75 0.185955
Target:  5'- cGCGGCCGCUGGUGCu-CAGGcGCu-- -3'
miRNA:   3'- -CGUCGGCGACCAUGcuGUCCcUGuuc -5'
30478 3' -55.6 NC_006548.1 + 22574 0.75 0.175924
Target:  5'- gGUAGUgGUUGGUGCGGCAGGuGCAGc -3'
miRNA:   3'- -CGUCGgCGACCAUGCUGUCCcUGUUc -5'
30478 3' -55.6 NC_006548.1 + 33247 1.1 0.000458
Target:  5'- aGCAGCCGCUGGUACGACAGGGACAAGu -3'
miRNA:   3'- -CGUCGGCGACCAUGCUGUCCCUGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.