miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30478 5' -64.2 NC_006548.1 + 18258 0.66 0.242959
Target:  5'- gUCCUCcgcguaGG-CGCUGaCUGAGCACUGGc -3'
miRNA:   3'- -AGGAGc-----CCgGCGACgGGCUCGUGGCC- -5'
30478 5' -64.2 NC_006548.1 + 35208 0.66 0.242958
Target:  5'- aUCgUUGGGCCGCuggacgucaUGUUCGGcGCcCCGGa -3'
miRNA:   3'- -AGgAGCCCGGCG---------ACGGGCU-CGuGGCC- -5'
30478 5' -64.2 NC_006548.1 + 27284 0.66 0.242959
Target:  5'- gCCUCGGcaGCgCGUUGCUCGGuCGCCGc -3'
miRNA:   3'- aGGAGCC--CG-GCGACGGGCUcGUGGCc -5'
30478 5' -64.2 NC_006548.1 + 31904 0.66 0.231088
Target:  5'- aCCUCGaa-CGCUG-CUGAGCGCCGa -3'
miRNA:   3'- aGGAGCccgGCGACgGGCUCGUGGCc -5'
30478 5' -64.2 NC_006548.1 + 23759 0.66 0.225337
Target:  5'- gUUCggCGGcGCCGCccacgUGCuuGAGCACCu- -3'
miRNA:   3'- -AGGa-GCC-CGGCG-----ACGggCUCGUGGcc -5'
30478 5' -64.2 NC_006548.1 + 33032 0.66 0.219709
Target:  5'- gCCggcCGGccagcGCCGCUGCaCCGGGCGCg-- -3'
miRNA:   3'- aGGa--GCC-----CGGCGACG-GGCUCGUGgcc -5'
30478 5' -64.2 NC_006548.1 + 37076 0.67 0.198385
Target:  5'- ---aUGGGCUGCUGCCgGuGCugCGc -3'
miRNA:   3'- aggaGCCCGGCGACGGgCuCGugGCc -5'
30478 5' -64.2 NC_006548.1 + 29647 0.67 0.208812
Target:  5'- ---cUGGuGCCGCUGCCagcGGUGCCGGu -3'
miRNA:   3'- aggaGCC-CGGCGACGGgc-UCGUGGCC- -5'
30478 5' -64.2 NC_006548.1 + 30785 0.67 0.193344
Target:  5'- -gCUCguagGGGCUGCugaUGCCCcGGUGCCGGu -3'
miRNA:   3'- agGAG----CCCGGCG---ACGGGcUCGUGGCC- -5'
30478 5' -64.2 NC_006548.1 + 34481 0.67 0.208812
Target:  5'- aUCCg-GGGaaCGCgacaGCCCGAGUACCaGGa -3'
miRNA:   3'- -AGGagCCCg-GCGa---CGGGCUCGUGG-CC- -5'
30478 5' -64.2 NC_006548.1 + 28843 0.67 0.214201
Target:  5'- aUCCa-GGGUCGCccaggcgGCgCGAGCACgGGc -3'
miRNA:   3'- -AGGagCCCGGCGa------CGgGCUCGUGgCC- -5'
30478 5' -64.2 NC_006548.1 + 27937 0.68 0.1654
Target:  5'- gUUCUCGcuGCCGCcaagGCCCuGGGCACCa- -3'
miRNA:   3'- -AGGAGCc-CGGCGa---CGGG-CUCGUGGcc -5'
30478 5' -64.2 NC_006548.1 + 23521 0.69 0.148838
Target:  5'- gCCUCGGGCCGgaUGaCCCGcugaccccgccaGGCGgUGGg -3'
miRNA:   3'- aGGAGCCCGGCg-AC-GGGC------------UCGUgGCC- -5'
30478 5' -64.2 NC_006548.1 + 13301 0.69 0.152025
Target:  5'- cCCUCGGcGCCGguUUGCCCGccgcaggagcgcGCGCCGa -3'
miRNA:   3'- aGGAGCC-CGGC--GACGGGCu-----------CGUGGCc -5'
30478 5' -64.2 NC_006548.1 + 13558 0.69 0.156922
Target:  5'- uUCCUCGGuGCC--UGCgCGGGCGgCGGc -3'
miRNA:   3'- -AGGAGCC-CGGcgACGgGCUCGUgGCC- -5'
30478 5' -64.2 NC_006548.1 + 33137 0.7 0.113853
Target:  5'- aCCggggCuGGCCGgUGCUCGGGCAgCGGc -3'
miRNA:   3'- aGGa---GcCCGGCgACGGGCUCGUgGCC- -5'
30478 5' -64.2 NC_006548.1 + 27518 0.71 0.094103
Target:  5'- gUCCagGGGCUGCUGUUCGccGGCaucGCCGGu -3'
miRNA:   3'- -AGGagCCCGGCGACGGGC--UCG---UGGCC- -5'
30478 5' -64.2 NC_006548.1 + 33350 0.74 0.060472
Target:  5'- cUCCUCGcGGCCGgagguCUGCcaacggaagCCGuGCACCGGg -3'
miRNA:   3'- -AGGAGC-CCGGC-----GACG---------GGCuCGUGGCC- -5'
30478 5' -64.2 NC_006548.1 + 15651 0.76 0.04321
Target:  5'- cCCUCGGGCUGCUGCCaguuaGcGGuCugCGGg -3'
miRNA:   3'- aGGAGCCCGGCGACGGg----C-UC-GugGCC- -5'
30478 5' -64.2 NC_006548.1 + 13418 0.78 0.029098
Target:  5'- aCCggcggCGGGCCaggucGCUGUuuGAGCGCCGGc -3'
miRNA:   3'- aGGa----GCCCGG-----CGACGggCUCGUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.