Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30479 | 3' | -58.3 | NC_006548.1 | + | 33662 | 1.1 | 0.00036 |
Target: 5'- gUGCGACGUCGCUCGGCCGGACAACGGu -3' miRNA: 3'- -ACGCUGCAGCGAGCCGGCCUGUUGCC- -5' |
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30479 | 3' | -58.3 | NC_006548.1 | + | 22916 | 0.76 | 0.115597 |
Target: 5'- cGCGGCGgcgaGUUgGGCCGGACuauCGGg -3' miRNA: 3'- aCGCUGCag--CGAgCCGGCCUGuu-GCC- -5' |
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30479 | 3' | -58.3 | NC_006548.1 | + | 15583 | 0.72 | 0.204492 |
Target: 5'- gGCcACGUCGUcgUCGGCCGGAUuGCa- -3' miRNA: 3'- aCGcUGCAGCG--AGCCGGCCUGuUGcc -5' |
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30479 | 3' | -58.3 | NC_006548.1 | + | 22154 | 0.72 | 0.22122 |
Target: 5'- cGCGGCugaacaUCGCUCGGCCgGGGCAGa-- -3' miRNA: 3'- aCGCUGc-----AGCGAGCCGG-CCUGUUgcc -5' |
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30479 | 3' | -58.3 | NC_006548.1 | + | 35722 | 0.71 | 0.233009 |
Target: 5'- -aCGACGUCGCgacgCuGCCcguauucgaugaGGACAGCGGg -3' miRNA: 3'- acGCUGCAGCGa---GcCGG------------CCUGUUGCC- -5' |
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30479 | 3' | -58.3 | NC_006548.1 | + | 36047 | 0.71 | 0.245323 |
Target: 5'- gGCGACGUguucugCGUUCGcaGCCGGAagcGCGGg -3' miRNA: 3'- aCGCUGCA------GCGAGC--CGGCCUgu-UGCC- -5' |
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30479 | 3' | -58.3 | NC_006548.1 | + | 31182 | 0.71 | 0.258172 |
Target: 5'- cGCaGA-GUCGCUCGGCUGGGucacCGACcGGg -3' miRNA: 3'- aCG-CUgCAGCGAGCCGGCCU----GUUG-CC- -5' |
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30479 | 3' | -58.3 | NC_006548.1 | + | 18761 | 0.71 | 0.2648 |
Target: 5'- cUGCGGCaggGUCGCuagcUCGGCCaGuGACAACGc -3' miRNA: 3'- -ACGCUG---CAGCG----AGCCGG-C-CUGUUGCc -5' |
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30479 | 3' | -58.3 | NC_006548.1 | + | 32569 | 0.7 | 0.27847 |
Target: 5'- cGCGugGcCGUUUGcGCCGGACugggcuGAUGGc -3' miRNA: 3'- aCGCugCaGCGAGC-CGGCCUG------UUGCC- -5' |
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30479 | 3' | -58.3 | NC_006548.1 | + | 36263 | 0.69 | 0.315087 |
Target: 5'- gGCGGgGUCcaGUucggCGGCUGGACuGCGGa -3' miRNA: 3'- aCGCUgCAG--CGa---GCCGGCCUGuUGCC- -5' |
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30479 | 3' | -58.3 | NC_006548.1 | + | 36580 | 0.69 | 0.322833 |
Target: 5'- cGCGAUcaaCGCcgCGGCCGGcACcGCGGu -3' miRNA: 3'- aCGCUGca-GCGa-GCCGGCC-UGuUGCC- -5' |
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30479 | 3' | -58.3 | NC_006548.1 | + | 33613 | 0.69 | 0.328339 |
Target: 5'- aGCGACGUCGCacgcaucucaUucaugacacuuugcCGGCaGGACAGCGa -3' miRNA: 3'- aCGCUGCAGCG----------A--------------GCCGgCCUGUUGCc -5' |
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30479 | 3' | -58.3 | NC_006548.1 | + | 21752 | 0.69 | 0.33072 |
Target: 5'- gGUGGCGcugaacucuacuUCGUUCGGCUuGGACuuGCGGc -3' miRNA: 3'- aCGCUGC------------AGCGAGCCGG-CCUGu-UGCC- -5' |
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30479 | 3' | -58.3 | NC_006548.1 | + | 19958 | 0.69 | 0.33072 |
Target: 5'- aGCGACGU-GC-CGGCCGGcggggaggauugGCAgagugGCGGu -3' miRNA: 3'- aCGCUGCAgCGaGCCGGCC------------UGU-----UGCC- -5' |
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30479 | 3' | -58.3 | NC_006548.1 | + | 33860 | 0.69 | 0.338749 |
Target: 5'- -aUGACcuuUCGCgcgCGGCCGGugAGCGa -3' miRNA: 3'- acGCUGc--AGCGa--GCCGGCCugUUGCc -5' |
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30479 | 3' | -58.3 | NC_006548.1 | + | 36807 | 0.68 | 0.355227 |
Target: 5'- cUGCGAgCGUCGC-CGaGCUGGu--GCGGc -3' miRNA: 3'- -ACGCU-GCAGCGaGC-CGGCCuguUGCC- -5' |
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30479 | 3' | -58.3 | NC_006548.1 | + | 17509 | 0.68 | 0.355227 |
Target: 5'- cUGCGGCGccaUCGCcgCuGCUGGGuCGACGGc -3' miRNA: 3'- -ACGCUGC---AGCGa-GcCGGCCU-GUUGCC- -5' |
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30479 | 3' | -58.3 | NC_006548.1 | + | 33367 | 0.68 | 0.371397 |
Target: 5'- cUGCGcaGCGcCGCaugcuccucgCGGCCGGAggucugcCAACGGa -3' miRNA: 3'- -ACGC--UGCaGCGa---------GCCGGCCU-------GUUGCC- -5' |
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30479 | 3' | -58.3 | NC_006548.1 | + | 17809 | 0.68 | 0.389844 |
Target: 5'- -uCGACGgauGCUUGGCCuGGAagaAGCGGa -3' miRNA: 3'- acGCUGCag-CGAGCCGG-CCUg--UUGCC- -5' |
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30479 | 3' | -58.3 | NC_006548.1 | + | 36757 | 0.68 | 0.389844 |
Target: 5'- gGCGACGcUCGCagagagccUCGcGCCGGuCGACu- -3' miRNA: 3'- aCGCUGC-AGCG--------AGC-CGGCCuGUUGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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